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Classification of phyla is from NCBI page
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2 accessions found for Rhodopseudomonas palustris CGA009  

Data for BX571963  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: BX571963.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX571963_2430 CDS_2762568-2761477 109.6 6.6e-31 1
BX571963_1321 CDS_1440217-1440915 63.1 1.1e-17 1
BX571963_3104 CDS_3513497-3512391 56.6 7.8e-16 1
BX571963_1295 CDS_1413532-1414743 50.2 5e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX571963_2430 1/1 160 243 .. 1 94 [] 109.6 6.6e-31
BX571963_1321 1/1 26 99 .. 1 78 [. 63.1 1.1e-17
BX571963_3104 1/1 167 253 .. 1 94 [] 56.6 7.8e-16
BX571963_1295 1/1 212 299 .. 1 94 [] 50.2 5e-14

Alignments of top-scoring domains:
BX571963_2430: domain 1 of 1, from 160 to 243: score 109.6, E = 6.6e-31
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E++HRV N+LQ+I+SLL LQa ++k ev ++aL + +RV++
BX571963_2 160 EVNHRVGNSLQIIASLLHLQASSSKQDEV-----KAALTNAMGRVAA 201

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A++H++LY+s dl++v + +Yle L+e+L++s+++ + l
BX571963_2 202 VAQVHRRLYTSHDLKSVMLNQYLESLLEDLRRSAEGNRMSR-----L 243

BX571963_1321: domain 1 of 1, from 26 to 99: score 63.1, E = 1.1e-17
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E +HR+ N+LQ+++SL+++++ + +d + + L+ + R+++
BX571963_1 26 ECNHRIANSLQMVASLISMESLQLQDDQA-----RRSLEMAGLRIQA 67

mAliHEeLYkse.dldtvdfseYlekLtenLf<-*
+A +H++LY + + d++d+++Yl L+++L+
BX571963_1 68 IAGVHRRLYSTSlGEDSLDLADYLISLIRELR 99

BX571963_3104: domain 1 of 1, from 167 to 253: score 56.6, E = 7.8e-16
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E +HRVKNNLQ+I++L+rL+ar++ + e+ aL +R+ +
BX571963_3 167 ELQHRVKNNLQLITALIRLEARSAAEGET------VALARLASRIDA 207

mAliHEeLYkse...dldtvdfseYlekLtenLfqsygvgsdgisLklDl
+++ L+ ++ d +++d+++Yl+ +++ +++ + g ++ + +
BX571963_3 208 LTALYRVLSDETpsaDAGQIDLGQYLSDIANAVIRANAAGEINCE----V 253

<-*

BX571963_3 - -

BX571963_1295: domain 1 of 1, from 212 to 299: score 50.2, E = 5e-14
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E +HRV NN+Q +S++LrL a ++ d + l aL +++ R
BX571963_1 212 ELQHRVANNMQFVSAMLRLYAKRAGDDPA---AMLTALDDARVRLDV 255

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
m+ iH++LY ++ + ++e+++ L++nL +++g + + ++ +
BX571963_1 256 MSRIHRHLYDPASVTR-PVGEFFQDLCANLGDAAGASEVRFTVD--M 299


Histogram of all scores:
score obs exp (one = represents 23 sequences)
----- --- ---
-15 8 0|=
-14 19 0|=
-13 80 30|=*==
-12 280 316|=============*
-11 1353 880|======================================*====================
-10 1071 1139|=============================================== *
-9 742 962|================================= *
-8 560 645|========================= *
-7 278 383|============= *
-6 237 213|=========*=
-5 76 115|====*
-4 49 60|==*
-3 33 31|=*
-2 9 16|*
-1 6 8|*
0 2 4|*
1 0 2|*
2 2 1|*
3 0 0|
4 0 0|
> 5 10 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 457.6063
P(chi-square) = 0

Total sequences searched: 4833

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: