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Classification of phyla is from NCBI page
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2 accessions found for Rhodopseudomonas palustris CGA009  

Data for BX571963  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: BX571963.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX571963_3016 CDS_3416877-3418013 61.0 1.3e-17 1
BX571963_1489 CDS_1655071-1652759 56.3 3.2e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX571963_3016 1/1 176 242 .. 1 70 [] 61.0 1.3e-17
BX571963_1489 1/1 573 639 .. 1 70 [] 56.3 3.2e-16

Alignments of top-scoring domains:
BX571963_3016: domain 1 of 1, from 176 to 242: score 61.0, E = 1.3e-17
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIARELHD +gQ+ +++ +l++++r + p+ ++e ++ +
BX571963_3 176 ERKRIARELHDNLGQMVTLVQFGLDALARGT---PSPANLAEKVASL 219

relarealaevRrllgdLRpaal<-*
++++++ + + r++++ Rp+al
BX571963_3 220 KHIVNDLSTSLHRVAWEVRPTAL 242

BX571963_1489: domain 1 of 1, from 573 to 639: score 56.3, E = 3.2e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER RIARELHD++gQsL+++ l+ + + ++ + d++e++++++e+
BX571963_1 573 ERLRIARELHDTLGQSLTLLQLGFDKLG-QA--AGDNPELQQRIAEM 616

relarealaevRrllgdLRpaal<-*
+ l + +++ rl++++Rp+al
BX571963_1 617 KSLTADVGRQANRLAWEIRPTAL 639


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-14 5 0|=
-13 51 0|====
-12 104 53|===*===
-11 181 441|============= *
-10 531 1023|==================================== *
-9 848 1162|========================================================= *
-8 762 896|=================================================== *
-7 685 563|=====================================*========
-6 527 318|=====================*==============
-5 471 171|===========*====================
-4 249 89|=====*===========
-3 147 45|==*=======
-2 96 23|=*=====
-1 64 11|*====
0 39 6|*==
1 22 3|*=
2 19 1|*=
3 5 0|=
4 2 0|=
5 4 0|=
> 6 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 2369.1794
P(chi-square) = 0

Total sequences searched: 4833

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: