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Classification of phyla is from NCBI page
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2 accessions found for Burkholderia pseudomallei K96243  

Data for BX571965  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: BX571965.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX571965_2333 CDS_2792767-2794701 59.4 2.7e-17 1
BX571965_1264 CDS_1447136-1448863 57.1 1.3e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX571965_2333 1/1 439 507 .. 1 70 [] 59.4 2.7e-17
BX571965_1264 1/1 366 429 .. 1 70 [] 57.1 1.3e-16

Alignments of top-scoring domains:
BX571965_2333: domain 1 of 1, from 439 to 507: score 59.4, E = 2.7e-17
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.earealde
ER+ A+ LHDs++QsL ++lq+++++ ++ + d+ are + +
BX571965_2 439 ERNLVAQGLHDSIAQSLNFVNLQTQMLADAI--AHDNLaDAREIVPM 483

irelarealaevRrllgdLRpaal<-*
+++ +++++a+vR+ll ++R+
BX571965_2 484 LKHGVEQGYADVRELLLNFRTRLT 507

BX571965_1264: domain 1 of 1, from 366 to 429: score 57.1, E = 1.3e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER RIARELHD+++Q+L++++l le++ + e++ + e+
BX571965_1 366 ERGRIARELHDELAQTLAMLRLDLERVSTTG--N----ELAGSFMEM 406

relarealaevRrllgdLRpaal<-*
r+l++ a a +Rr+++dLRp l
BX571965_1 407 RGLLDGAVAATRRIASDLRPLML 429


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 5 0|=
-13 30 0|===
-12 68 37|===*===
-11 123 311|============= *
-10 332 722|================================== *
-9 566 820|========================================================= *
-8 485 632|================================================= *
-7 460 397|=======================================*======
-6 416 225|======================*===================
-5 378 120|===========*==========================
-4 202 63|======*==============
-3 123 32|===*=========
-2 81 16|=*=======
-1 44 8|*====
0 25 4|*==
1 24 2|*==
2 16 1|*=
3 8 0|=
4 3 0|=
5 2 0|=
6 1 0|=
7 2 0|=
8 2 0|=
9 0 0|
> 10 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 2142.9280
P(chi-square) = 0

Total sequences searched: 3460

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: