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Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

2 accessions found for Burkholderia pseudomallei K96243  

Data for BX571966  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: BX571966.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX571966_2357 CDS_3115766-3117166 64.0 8.5e-19 1
BX571966_1185 CDS_1549297-1551264 62.0 3.2e-18 1
BX571966_1386 CDS_1860014-1858536 54.3 5.9e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX571966_2357 1/1 253 323 .. 1 70 [] 64.0 8.5e-19
BX571966_1185 1/1 436 512 .. 1 70 [] 62.0 3.2e-18
BX571966_1386 1/1 285 353 .. 1 70 [] 54.3 5.9e-16

Alignments of top-scoring domains:
BX571966_2357: domain 1 of 1, from 253 to 323: score 64.0, E = 8.5e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe...eareal
ERaR+ARELHD+++Q++ ++kl+ e a+ +l + p+++++a++al
BX571966_2 253 ERARLARELHDGISQMMVSAKLMFESALERL--AHLPArenAAQAAL 297

deirelarealaevRrllgdLRpaal<-*
+ + ++l+evRr+ ++LRp+ l
BX571966_2 298 SKGIARLGDTLREVRRISHALRPTML 323

BX571966_1185: domain 1 of 1, from 436 to 512: score 62.0, E = 3.2e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrllds......dkdpe..e
E +RIARELHD +gQ+L+a+k+ +++++ +l + +++++++p+ +
BX571966_1 436 EKTRIARELHDDLGQQLTALKMDVSAVAIAL-AryrdtqADAPPiaA 481

arealdeirelarealaevRrllgdLRpaal<-*
++++l+ +r+l++ + a vRr++ dLRp l
BX571966_1 482 VEQQLHGMRRLIDSTVASVRRIAADLRPVML 512

BX571966_1386: domain 1 of 1, from 285 to 353: score 54.3, E = 5.9e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe..eareald
E +RIARELHD +gQ+L+a+k+ + l+ l kd++ +l
BX571966_1 285 EKTRIARELHDDLGQQLTALKMAVTLVDNEL---KDAGwaSRTSRLP 328

eirelarealaevRrllgdLRpaal<-*
++ +l+ + l+ vRr++ dLRp l
BX571966_1 329 NVYALIGQLLDTVRRIAADLRPVML 353


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 2 0|=
-13 23 0|====
-12 37 26|====*==
-11 59 213|========== *
-10 236 495|======================================== *
-9 344 562|==========================================================*
-8 353 433|==========================================================*
-7 349 272|=============================================*=============
-6 248 154|=========================*================
-5 265 82|=============*===============================
-4 140 43|=======*================
-3 101 22|===*=============
-2 46 11|=*======
-1 49 5|*========
0 22 2|*===
1 16 1|*==
2 7 0|==
3 7 0|==
4 6 0|=
5 3 0|=
6 8 0|==
7 0 0|
8 3 0|=
9 1 0|=
> 10 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1757.6161
P(chi-square) = 0

Total sequences searched: 2395

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: