Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

1 accessions found for Bartonella henselae str. Houston-1  

Data for BX897699  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BX897699.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX897699_0474 CDS_561786-559465 93.4 1.5e-26 1
BX897699_0030 CDS_40394-37929 79.3 1.6e-22 1
BX897699_0061 CDS_84625-82841 71.9 2e-20 1
BX897699_0379 CDS_439084-440397 52.5 6.3e-15 1
BX897699_0470 CDS_552322-553704 48.5 8.5e-14 1
BX897699_0575 CDS_684176-686440 45.2 7.1e-13 1
BX897699_0939 CDS_1059514-1057037 33.7 1.3e-09 1
BX897699_1140 CDS_1308074-1309414 29.6 1.9e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX897699_0474 1/1 546 615 .. 1 87 [] 93.4 1.5e-26
BX897699_0030 1/1 592 660 .. 1 87 [] 79.3 1.6e-22
BX897699_0061 1/1 358 423 .. 1 87 [] 71.9 2e-20
BX897699_0379 1/1 199 267 .. 1 87 [] 52.5 6.3e-15
BX897699_0470 1/1 240 306 .. 1 87 [] 48.5 8.5e-14
BX897699_0575 1/1 509 580 .. 1 87 [] 45.2 7.1e-13
BX897699_0939 1/1 449 515 .. 1 87 [] 33.7 1.3e-09
BX897699_1140 1/1 243 301 .. 1 87 [] 29.6 1.9e-08

Alignments of top-scoring domains:
BX897699_0474: domain 1 of 1, from 546 to 615: score 93.4, E = 1.5e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g+++++l + ++l+++
BX897699_0 546 AKSEFLANMSHELRTPLNAILGFSDIMLQSTF------GPLGSQR-- 584

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey + i++++++ll Lind+Ld+s+ieag
BX897699_0 585 ---------YQEYMHDIYNSGNHLLTLINDILDMSKIEAG 615

BX897699_0030: domain 1 of 1, from 592 to 660: score 79.3, E = 1.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+ ++s ELRTPLt I+g++++L++ ++ ++ +e q
BX897699_0 592 LRNEFVQHVSYELRTPLTNIIGFSDILRD------QIFGPINERQ-- 630

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl i++e+ +ll+++nd+Ldl+ ++ag
BX897699_0 631 ----------QEYLGHIHSESGSLLNIVNDILDLATLDAG 660

BX897699_0061: domain 1 of 1, from 358 to 423: score 71.9, E = 2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a++sHEL++PLt++r ++e+L +++ee +
BX897699_0 358 AIERFAADVSHELKNPLTSLRSAVETLPL----------AKNEEAQ- 393

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++e+i+++++rl+rLi d+ d sr++a+
BX897699_0 394 ----------EQLIEIIQHDVRRLDRLITDISDASRLDAE 423

BX897699_0379: domain 1 of 1, from 199 to 267: score 52.5, E = 6.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ + HE+RTPL+a++g+ae++++ ++ ++ + e
BX897699_0 199 EENKMVG-VVHEMRTPLNALIGFAEIMRD------GRFGAIDNER-- 236

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr yl+ i+++++++l+L+n+lL+ s++
BX897699_0 237 ---------YRGYLRDIISSGRHILSLVNQLLECSKANYL 267

BX897699_0470: domain 1 of 1, from 240 to 306: score 48.5, E = 8.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ n++H+L+TPLt +r ae++l + ++ +
BX897699_0 240 GLRQVSDNIAHDLKTPLTRLRNRAEAALS---------GQKTKFE-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ++l+ i+ e+++l r n +L +sriea
BX897699_0 276 ---------YCQALDGIIAESDQLIRTFNAILMISRIEAS 306

BX897699_0575: domain 1 of 1, from 509 to 580: score 45.2, E = 7.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae +++++d + + ++
BX897699_0 509 AWADIARRIAHEIKNPLTPIQLSAERIRKRYD-----RVITQDREV- 549

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ti+r++ + r+++++ ++r+ +
BX897699_0 550 ---------FERCIDTIIRQVGDIGRMVDEFSSFARMPKP 580

BX897699_0939: domain 1 of 1, from 449 to 515: score 33.7, E = 1.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI++ ++lLl+ t++s + +
BX897699_0 449 AVGQLAGGIAHDFNNVLTAILMSCDLLLN---------THRSFDPA- 485

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l i++ a+r +L+++lL +sr ++
BX897699_0 486 ----------YADLINIKNNANRAAALVQQLLAFSRKQTL 515

BX897699_1140: domain 1 of 1, from 243 to 301: score 29.6, E = 1.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l+++sH+LRT Lt ++ + l+ +++d
BX897699_1 243 QRTMMLSGVSHDLRTILTRFKLQLALANTDFD--------------- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++++ ++++++ L ++r e +
BX897699_1 275 -------------TNPLEQDVSDMQNMLEGYLAFARGEGN 301


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-14 2 0|=
-13 25 1|*====
-12 94 34|======*============
-11 176 176|===================================*
-10 248 327|================================================== *
-9 281 337|========================================================= *
-8 229 252|============================================== *
-7 172 159|===============================*===
-6 109 91|==================*===
-5 72 50|=========*=====
-4 31 26|=====*=
-3 17 14|==*=
-2 10 7|=*
-1 4 3|*
0 2 2|*
1 2 1|*
2 3 0|=
3 1 0|=
> 4 10 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 152.4210
P(chi-square) = 1.183e-27

Total sequences searched: 1612

Whole sequence top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: