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Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Bartonella quintana str. Toulouse  

Data for BX897700  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BX897700.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX897700_0394 CDS_500587-498266 92.2 2.7e-26 1
BX897700_0028 CDS_37935-35491 78.1 2.8e-22 1
BX897700_0055 CDS_76439-74655 72.5 1.1e-20 1
BX897700_0281 CDS_357391-358698 51.4 1e-14 1
BX897700_0390 CDS_490978-492360 49.4 3.8e-14 1
BX897700_0491 CDS_607036-609300 43.4 1.9e-12 1
BX897700_0716 CDS_872981-870492 35.6 3e-10 1
BX897700_0331 CDS_418843-417503 34.9 5e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX897700_0394 1/1 546 615 .. 1 87 [] 92.2 2.7e-26
BX897700_0028 1/1 590 658 .. 1 87 [] 78.1 2.8e-22
BX897700_0055 1/1 358 423 .. 1 87 [] 72.5 1.1e-20
BX897700_0281 1/1 197 265 .. 1 87 [] 51.4 1e-14
BX897700_0390 1/1 240 306 .. 1 87 [] 49.4 3.8e-14
BX897700_0491 1/1 509 580 .. 1 87 [] 43.4 1.9e-12
BX897700_0716 1/1 453 519 .. 1 87 [] 35.6 3e-10
BX897700_0331 1/1 243 301 .. 1 87 [] 34.9 5e-10

Alignments of top-scoring domains:
BX897700_0394: domain 1 of 1, from 546 to 615: score 92.2, E = 2.7e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g+++++l + ++l+++
BX897700_0 546 AKSEFLANMSHELRTPLNAILGFSDIMLQSTF------GPLGSKR-- 584

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey + i++++ +ll Lind+Ld+s+ieag
BX897700_0 585 ---------YKEYMRDIYNSGSHLLTLINDILDMSKIEAG 615

BX897700_0028: domain 1 of 1, from 590 to 658: score 78.1, E = 2.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+ ++s ELRTPLt I+g++++L++ ++ + +e q
BX897700_0 590 LRNEFVQHVSYELRTPLTNIIGFSDILRD------QIFGSINERQ-- 628

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl i++e+ ll+++nd+Ldl+ ++ag
BX897700_0 629 ----------KEYLGHIHSESSTLLNIVNDILDLATLDAG 658

BX897700_0055: domain 1 of 1, from 358 to 423: score 72.5, E = 1.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a++sHEL++PLt++r ++e+L +++ee +
BX897700_0 358 AIERFAADVSHELKNPLTSLRSAVETLPL----------AKNEEAQ- 393

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++le+i+++++rl+rLi d+ d sr++a+
BX897700_0 394 ----------EQLLEIIQHDVRRLDRLITDISDASRLDAE 423

BX897700_0281: domain 1 of 1, from 197 to 265: score 51.4, E = 1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ + HE+RTPL+a++g+ae++++ ++ + e
BX897700_0 197 EENKMVG-VVHEMRTPLNALIGFAEIMRD------GRFGSIENER-- 234

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr yl+ i+++++++l+L+n+lL+ s++ +
BX897700_0 235 ---------YRGYLRDIISSGKHILSLVNQLLECSKANHS 265

BX897700_0390: domain 1 of 1, from 240 to 306: score 49.4, E = 3.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ n++H+L+TPLt +r ae++l + ++ +
BX897700_0 240 GLRQVSDNIAHDLKTPLTRLRNRAEAALL---------GQKTKFE-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr++l+ i+ e+++l r n +L +sriea
BX897700_0 276 ---------YRQALDGIIAESDQLIRTFNAILMISRIEAS 306

BX897700_0491: domain 1 of 1, from 509 to 580: score 43.4, E = 1.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae ++++++k + ++
BX897700_0 509 AWADIARRIAHEIKNPLTPIQLSAERIRKRYNK-----VITQDREV- 549

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ti+r++ + r+++++ ++r+ +
BX897700_0 550 ---------FDRCIDTIIRQVGDIGRMVDEFSSFARMPKP 580

BX897700_0716: domain 1 of 1, from 453 to 519: score 35.6, E = 3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI++ ++ Ll+ ++s++ +
BX897700_0 453 AVGQLAGGIAHDFNNVLTAILMSCDFLLN---------MHRSSDPA- 489

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l i++ a+r +L+++lL +sr ++
BX897700_0 490 ----------YADLINIKNNANRAAALVQQLLAFSRKQTL 519

BX897700_0331: domain 1 of 1, from 243 to 301: score 34.9, E = 5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l+++sH+LRT Lt ++ + l+ +++d
BX897700_0 243 QRTMMLSGVSHDLRTILTRFKLQLALANTDFD--------------- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++++ ++++++d L ++r e
BX897700_0 275 -------------TNLLEQDVSDMQNMLEDYLAFARGEGS 301


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 2 0|=
-13 16 0|====
-12 55 26|======*=======
-11 111 135|============================ *
-10 199 251|================================================== *
-9 215 259|====================================================== *
-8 197 194|================================================*=
-7 149 122|==============================*=======
-6 83 70|=================*===
-5 46 38|=========*==
-4 27 20|====*==
-3 11 10|==*
-2 10 5|=*=
-1 7 2|*=
0 2 1|*
1 1 0|=
2 1 0|=
3 0 0|
> 4 10 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 69.3926
P(chi-square) = 5.808e-11

Total sequences searched: 1308

Whole sequence top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: