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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

1 accessions found for Bartonella quintana str. Toulouse  

Data for BX897700  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: BX897700.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX897700_1048 CDS_1302571-1301114 58.6 5.4e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX897700_1048 1/1 280 350 .. 1 76 [. 58.6 5.4e-17

Alignments of top-scoring domains:
BX897700_1048: domain 1 of 1, from 280 to 350: score 58.6, E = 5.4e-17
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
HR+ N+L ++SSLL Q ++++eev + +L +++R+++
BX897700_1 280 DASHRIGNSLGTVSSLLGVQLNRSTNEEV-----RSVLGAARDRIQT 321

mAliHEeLYksedldtvdfseYlekLten<-*
+++ H++L s+d++t ++e+l+ ++++
BX897700_1 322 ISTAHRRLRLSDDMETTLLAEFLSSVVHD 350


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-14 4 0|=
-13 7 7|=*
-12 50 75|========== *
-11 234 208|=========================================*=====
-10 219 270|============================================ *
-9 242 228|=============================================*===
-8 155 153|==============================*
-7 92 90|=================*=
-6 67 50|=========*====
-5 28 27|=====*
-4 23 14|==*==
-3 9 7|=*
-2 6 3|*=
-1 1 2|*
0 1 1|*
1 1 0|=
2 0 0|
3 0 0|
4 1 0|=
> 5 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 32.5709
P(chi-square) = 0.0003215

Total sequences searched: 1308

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: