Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
25 projects found  

1 accessions found for Candidatus Protochlamydia amoebophila UWE25  

Data for BX908798  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BX908798.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX908798_1881 CDS_2241946-2243715 71.1 4.2e-20 1
BX908798_1365 CDS_1636236-1635004 50.3 3.1e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX908798_1881 1/1 361 428 .. 1 87 [] 71.1 4.2e-20
BX908798_1365 1/1 193 255 .. 1 83 [. 50.3 3.1e-14

Alignments of top-scoring domains:
BX908798_1881: domain 1 of 1, from 361 to 428: score 71.1, E = 4.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHEL+TP+t Irg+ae+L ++ + l+ + +
BX908798_1 361 MRRDFIANASHELKTPITIIRGFAEALYDN--------PGLPQDIQ- 398

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ +i r +r+ +Li dlL+l+ ie+
BX908798_1 399 ----------NEITTKIVRNCKRMTALIKDLLTLADIENI 428

BX908798_1365: domain 1 of 1, from 193 to 255: score 50.3, E = 3.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++a+l+HE+R+PL +I+g+a lL+ +l ++++e q
BX908798_1 193 ELGEMAAHLAHEIRNPLGGIKGFATLLQQDL-------ADRPELQ-- 230

peLRledpeyreyletilreaerllrLindlLdlsr<-*
++ i++ +++l++ ++ +L+++r
BX908798_1 231 -----------QMAYHIIEGTDSLNHFVSSILTYTR 255


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 1 0|=
-14 12 0|==
-13 43 1|*======
-12 135 46|======*=============
-11 222 240|================================ *
-10 355 446|=================================================== *
-9 327 461|=============================================== *
-8 297 345|=========================================== *
-7 257 217|==============================*======
-6 156 125|=================*=====
-5 97 68|=========*====
-4 54 36|=====*==
-3 33 19|==*==
-2 13 10|=*
-1 15 5|*==
0 4 2|*
1 2 1|*
2 3 0|=
3 1 0|=
> 4 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 297.3438
P(chi-square) = 0

Total sequences searched: 2031

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: