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Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Corynebacterium glutamicum ATCC 13032  

Data for BX927147  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BX927147.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX927147_0751 CDS_792985-794484 74.4 7.3e-21 1
BX927147_0411 CDS_425933-427174 74.0 9.4e-21 1
BX927147_0279 CDS_291243-289774 71.3 5.4e-20 1
BX927147_2554 CDS_2747407-2745950 57.8 3.7e-16 1
BX927147_2610 CDS_2804088-2805206 47.7 2.6e-13 1
BX927147_0872 CDS_930282-931721 43.9 3.2e-12 1
BX927147_2917 CDS_3140953-3139754 43.0 5.8e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX927147_0751 1/1 252 319 .. 1 87 [] 74.4 7.3e-21
BX927147_0411 1/1 156 222 .. 1 87 [] 74.0 9.4e-21
BX927147_0279 1/1 258 322 .. 1 87 [] 71.3 5.4e-20
BX927147_2554 1/1 266 330 .. 1 87 [] 57.8 3.7e-16
BX927147_2610 1/1 147 211 .. 1 87 [] 47.7 2.6e-13
BX927147_0872 1/1 246 318 .. 1 87 [] 43.9 3.2e-12
BX927147_2917 1/1 143 207 .. 1 87 [] 43.0 5.8e-12

Alignments of top-scoring domains:
BX927147_0751: domain 1 of 1, from 252 to 319: score 74.4, E = 7.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt++r++a+l+ + +++els+
BX927147_0 252 LQRQFTSDVSHELRTPLTTVRMAADLIAD-------SEDELSPGA-- 289

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ + + re++r ++L++dlL++sr +ag
BX927147_0 290 ----------RRASQLMNRELDRFESLLSDLLEISRHDAG 319

BX927147_0411: domain 1 of 1, from 156 to 222: score 74.0, E = 9.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+an+sHEL+TP+ ++ ++ae+L e + ++eq+
BX927147_0 156 ARRDFVANVSHELKTPVGGMALLAEALME---------SSDDPEQV- 192

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++++rea+r+ ++in+l ls+++
BX927147_0 193 ----------EYFGSRLHREAHRMADMINELISLSKLQGA 222

BX927147_0279: domain 1 of 1, from 258 to 322: score 71.3, E = 5.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ ++ HELRTP+t++rg +elL + + +eeq
BX927147_0 258 DQRQFVDDAGHELRTPITVVRGQLELLAT----------TPPEEQ-- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e + e++r++r++ndlL+l+ +++g
BX927147_0 293 ----------ARSIELATTELDRMSRMVNDLLTLAVADSG 322

BX927147_2554: domain 1 of 1, from 266 to 330: score 57.8, E = 3.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sHELRTPLt+++g++el ++++
BX927147_2 266 QMRRFVGDASHELRTPLTSVKGFTELYSS----------GATDDA-- 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++i ea+r++ L++dlL l+r+e +
BX927147_2 301 ----------NWVMSKIGGEAQRMSVLVEDLLSLTRAEGQ 330

BX927147_2610: domain 1 of 1, from 147 to 211: score 47.7, E = 2.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l++lsHE++TPL++++ y++ L++++ e+++++
BX927147_2 147 LRRNMLSDLSHEMNTPLSVLLVYVDGLQDGM-------VEWDADT-- 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ rl+rL +dl d sr+++
BX927147_2 185 -------------HAVFAEQLGRLSRLTSDLDDVSRAQEH 211

BX927147_0872: domain 1 of 1, from 246 to 318: score 43.9, E = 3.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
++s+++a++ HEL+TPLt++r+++elLl+ + g + + e++
BX927147_0 246 RQSQLVADAGHELKTPLTSMRTNIELLLM----AtNSGGSGIPKEEL 288

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +l + +++Li dl dl+r e+
BX927147_0 289 -----------DGLQRDVLAQMTEMSDLIGDLVDLAREETA 318

BX927147_2917: domain 1 of 1, from 143 to 207: score 43.0, E = 5.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l++l+HE+ TPL+++ y++ L++++ +++ +
BX927147_2 143 VRRQMLSDLAHEMGTPLSVLTVYLDGLQDGV-------VDWNNAT-- 180

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++ rl rL +d+ d sr+++
BX927147_2 181 -------------HTIMADQLTRLTRLMEDIDDVSRAQEH 207


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 2 0|=
-14 17 0|==
-13 70 2|*======
-12 146 69|======*=======
-11 338 362|=============================== *
-10 521 672|================================================ *
-9 612 694|======================================================== *
-8 489 519|============================================= *
-7 367 327|=============================*====
-6 209 188|=================*=
-5 125 103|=========*==
-4 70 55|====*==
-3 43 29|==*=
-2 14 15|=*
-1 14 8|*=
0 5 4|*
1 3 2|*
2 2 1|*
3 1 0|=
4 1 0|=
5 0 0|
> 6 8 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 156.6015
P(chi-square) = 6.651e-28

Total sequences searched: 3058

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

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