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Classification of phyla is from NCBI page
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264 projects found  

3 accessions found for Yersinia pseudotuberculosis IP 32953  

Data for BX936398  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BX936398.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX936398_0918 CDS_1107574-1108890 88.2 1.2e-24 1
BX936398_0311 CDS_380699-377880 86.8 2.9e-24 1
BX936398_0750 CDS_904761-901933 85.9 5.1e-24 1
BX936398_1257 CDS_1500595-1503468 79.3 3.7e-22 1
BX936398_3498 CDS_4166518-4164182 75.7 4.2e-21 1
BX936398_1990 CDS_2349239-2347848 69.5 2.3e-19 1
BX936398_2874 CDS_3404409-3402973 68.8 3.6e-19 1
BX936398_2726 CDS_3225469-3227013 67.1 1.1e-18 1
BX936398_2815 CDS_3331908-3333293 67.0 1.2e-18 1
BX936398_1920 CDS_2260355-2256327 65.8 2.6e-18 1
BX936398_0069 CDS_81244-79868 63.6 1.1e-17 1
BX936398_0023 CDS_32253-31204 62.4 2.4e-17 1
BX936398_2917 CDS_3451325-3454051 61.1 5.6e-17 1
BX936398_3168 CDS_3729581-3728163 58.1 4e-16 1
BX936398_2716 CDS_3212770-3211421 53.5 8.1e-15 1
BX936398_3761 CDS_4467467-4466115 53.2 9.6e-15 1
BX936398_1204 CDS_1434661-1436475 53.0 1.1e-14 1
BX936398_0468 CDS_553897-552830 46.9 6e-13 1
BX936398_3806 CDS_4539546-4542101 40.4 4e-11 1
BX936398_2229 CDS_2632754-2634058 36.2 6.1e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX936398_0918 1/1 203 269 .. 1 87 [] 88.2 1.2e-24
BX936398_0311 1/1 397 462 .. 1 87 [] 86.8 2.9e-24
BX936398_0750 1/1 291 356 .. 1 87 [] 85.9 5.1e-24
BX936398_1257 1/1 479 544 .. 1 87 [] 79.3 3.7e-22
BX936398_3498 1/1 282 347 .. 1 87 [] 75.7 4.2e-21
BX936398_1990 1/1 240 306 .. 1 87 [] 69.5 2.3e-19
BX936398_2874 1/1 252 320 .. 1 87 [] 68.8 3.6e-19
BX936398_2726 1/1 280 350 .. 1 87 [] 67.1 1.1e-18
BX936398_2815 1/1 237 301 .. 1 87 [] 67.0 1.2e-18
BX936398_1920 1/1 745 809 .. 1 87 [] 65.8 2.6e-18
BX936398_0069 1/1 238 300 .. 1 87 [] 63.6 1.1e-17
BX936398_0023 1/1 129 194 .. 1 87 [] 62.4 2.4e-17
BX936398_2917 1/1 665 732 .. 1 87 [] 61.1 5.6e-17
BX936398_3168 1/1 255 320 .. 1 87 [] 58.1 4e-16
BX936398_2716 1/1 228 291 .. 1 87 [] 53.5 8.1e-15
BX936398_3761 1/1 233 293 .. 1 87 [] 53.2 9.6e-15
BX936398_1204 1/1 370 436 .. 1 87 [] 53.0 1.1e-14
BX936398_0468 1/1 136 196 .. 1 87 [] 46.9 6e-13
BX936398_3806 1/1 497 559 .. 1 87 [] 40.4 4e-11
BX936398_2229 1/1 211 271 .. 1 87 [] 36.2 6.1e-10

Alignments of top-scoring domains:
BX936398_0918: domain 1 of 1, from 203 to 269: score 88.2, E = 1.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e++ + +el + r
BX936398_0 203 ARRNFFANVSHELRTPLTVLQGYLEMMHD---------QELAGPLR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l t++++++r++ L+ +lL+lsriea
BX936398_0 240 ----------DKALGTMQEQTKRMDGLVKQLLTLSRIEAA 269

BX936398_0311: domain 1 of 1, from 397 to 462: score 86.8, E = 2.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+ l ++sHE+RTPL++ +g++elL++ t+l++ q
BX936398_0 397 RKSDHLTTISHEIRTPLNGALGAVELLQN---------TPLDAGQ-- 432

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ et+++++ +ll++in+lLd+srie+g
BX936398_0 433 ----------MRLAETAHQCSLSLLAIINNLLDFSRIESG 462

BX936398_0750: domain 1 of 1, from 291 to 356: score 85.9, E = 5.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l+ t l++ q
BX936398_0 291 IKSEFLANMSHELRTPLNGVIGFTRQTLK---------TSLTPTQ-- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+r+a+ ll +ind+Ld+s++ea
BX936398_0 327 ----------TDYLQTIQRSANNLLCIINDVLDFSKLEAD 356

BX936398_1257: domain 1 of 1, from 479 to 544: score 79.3, E = 3.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ el+
BX936398_1 479 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KELPQGV-- 514

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +++ ll++i+d+Ld+s+ie++
BX936398_1 515 ----------DRLVTAMNNSSGLLLKIISDILDFSKIESE 544

BX936398_3498: domain 1 of 1, from 282 to 347: score 75.7, E = 4.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ tel++eq
BX936398_3 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TELDAEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+ +a l ++ nd+ ++ ++e
BX936398_3 318 ----------LKYLKTIHVSAITLGNIFNDIIEMDKLERR 347

BX936398_1990: domain 1 of 1, from 240 to 306: score 69.5, E = 2.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELRTPLt ++g ++l l ++ ++
BX936398_1 240 QLESFNADVAHELRTPLTNLMGQTQLGLS---------RKRETHEL- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++le+ l+e+er+ +++nd+L ls ++ag
BX936398_1 277 ----------EDLLESNLEELERMTSIVNDMLFLSHAQAG 306

BX936398_2874: domain 1 of 1, from 252 to 320: score 68.8, E = 3.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl+++sHEL+TPL+++r +elL +e+ ++l+ +q
BX936398_2 252 QRHEFLRHISHELKTPLASMREGTELLADEVA------GPLTQDQ-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + ++++++++l++Li++lLd+ r a
BX936398_2 291 ----------QEVVAILDHSSRHLQQLIEQLLDYNRKLAD 320

BX936398_2726: domain 1 of 1, from 280 to 350: score 67.1, E = 1.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ +sHEL+TPLt I +yae+L+e l+ ++ ++
BX936398_2 280 QQVSFVGQVSHELKTPLTNITLYAEMLQE-----LQPEQSVPPTAE- 320

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yle+il+e++rl+rLi+++L ++++
BX936398_2 321 ----------QRYLEVILNESQRLSRLIQNILSFTKAPKL 350

BX936398_2815: domain 1 of 1, from 237 to 301: score 67.0, E = 1.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rg +e+L+++l ++e
BX936398_2 237 MRRDFMADVSHELRTPLAVLRGELEALQDGL-------RQPTPES-- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++++ e+ l +L+ndl +ls+ + g
BX936398_2 275 -------------LSSLQAEVAILTKLVNDLHQLSQSDRG 301

BX936398_1920: domain 1 of 1, from 745 to 809: score 65.8, E = 2.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks fla++sHELRTP+ aI+g++el + ++++ e+
BX936398_1 745 TKSTFLATISHELRTPMYAIMGLLELEIR---------SNRPVEK-- 780

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l t+ ++a++l L++d+ d ++ieag
BX936398_1 781 -----------DTLVTVSKSAQSLMLLLDDIIDSAKIEAG 809

BX936398_0069: domain 1 of 1, from 238 to 300: score 63.6, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++++++sHELRTPLt +++++ l+++ + ++
BX936398_0 238 AQQRLISDISHELRTPLTRLQLATALMRR---------RHGEGKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL lsr ++
BX936398_0 274 -------------LERIEMEAQRLDSMINDLLVLSRSQHK 300

BX936398_0023: domain 1 of 1, from 129 to 194: score 62.4, E = 2.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
BX936398_0 129 AARDLVRGLAHEIKNPLGGLRGAAQLLAK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+++i+++a+rl++L+++lL r ++
BX936398_0 165 ----------LEYTQVIIEQADRLRNLVDRLLGPQRPGQH 194

BX936398_2917: domain 1 of 1, from 665 to 732: score 61.1, E = 5.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l ++ ++ +
BX936398_2 665 LRNSLLAALSHDLRTPLTVLFGQAEILTLDL-------AAEGSRH-- 702

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++++ + rL+n+lLd++ri++g
BX936398_2 703 ----------APQANQIRQQVLSTTRLVNNLLDMARIQSG 732

BX936398_3168: domain 1 of 1, from 255 to 320: score 58.1, E = 4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HEL+ PL+aI+g+aelL+e ++ +e
BX936398_3 255 YIEQYVHTLTHELKSPLAAISGAAELLRE---------SPPPETA-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i++++ r+++L++ +L +r+e+
BX936398_3 291 ----------QRFLINIEQQSARIQQLVDKMLVQARLESR 320

BX936398_2716: domain 1 of 1, from 228 to 291: score 53.5, E = 8.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l ++sHELR PL+ +++++ l +++++ +
BX936398_2 228 AREQLLHDVSHELRSPLARLQLAIGL------------AHQNPGNV- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l++i++e+erl+++i +lL lsr+e+
BX936398_2 262 ----------DNALQRIEHESERLDKMIGELLALSRAENH 291

BX936398_3761: domain 1 of 1, from 233 to 293: score 53.2, E = 9.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e ++
BX936398_3 233 DRTLLMAGVSHDLRTPLTRIRLATEMMSE--------------DD-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e+i +++e ++++i+++ d+ r +++
BX936398_3 264 ----------AYLSESINKDIEECNAIIEQFIDYLRTGQE 293

BX936398_1204: domain 1 of 1, from 370 to 436: score 53.0, E = 1.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++a+++HE+R+PL++I+g+a+ + +++++e+
BX936398_1 370 AIGNLAAGVAHEIRNPLSSIKGFAKYFEG--------HSPQGSEE-- 406

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +++++e++rl+r + +lL l r
BX936398_1 407 ----------QELAKVMIKEVDRLNRAVTELLGLVRPSDL 436

BX936398_0468: domain 1 of 1, from 136 to 196: score 46.9, E = 6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a+++HELRTPL++Ir+++el+++ + e +
BX936398_0 136 QERLFTADAAHELRTPLAGIRLHLELMEK---------QGIAESK-- 171

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++ l + i++lL lsr++++
BX936398_0 172 ---------------SLINRIDLLMHTIEQLLMLSRAGQN 196

BX936398_3806: domain 1 of 1, from 497 to 559: score 40.4, E = 4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I+g +el + + s+ +r
BX936398_3 497 AVGQLTGGLAHDFNNLLAVIIGSLELTAT----------DSSDATR- 532

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++l++aer +L ++lL +sr ++
BX936398_3 533 -------------IHRALKAAERGAQLTQRLLAFSRKQSL 559

BX936398_2229: domain 1 of 1, from 211 to 271: score 36.2, E = 6.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k ++ +++HELRTPL +r + + + l+e ++
BX936398_2 211 SKKLLIDGIAHELRTPLVRLRYRLAMSDN-----------LTESEQ- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++ +l++Li++lL+++r++ +
BX936398_2 246 --------------QALHHDIGQLEALIDELLTYARLDRP 271


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-17 1 0|=
-16 0 0|
-15 1 0|=
-14 9 0|=
-13 38 2|*==
-12 171 89|======*======
-11 354 462|========================== *
-10 651 857|=============================================== *
-9 770 885|======================================================= *
-8 685 663|===============================================*=
-7 459 418|=============================*===
-6 314 240|=================*=====
-5 190 131|=========*====
-4 114 70|====*====
-3 48 37|==*=
-2 25 19|=*
-1 28 10|*=
0 7 5|*
1 5 2|*
2 3 1|*
3 0 0|
4 3 0|=
5 1 0|=
6 1 0|=
> 7 23 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 280.8428
P(chi-square) = 0

Total sequences searched: 3974

Whole sequence top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: