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1 accessions found for Methanococcus maripaludis S2  

Data for BX950229  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BX950229.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX950229_1303 CDS_1290634-1288715 82.7 1.8e-23 1
BX950229_1120 CDS_1109187-1111031 78.2 3.4e-22 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX950229_1303 1/1 412 480 .. 1 87 [] 82.7 1.8e-23
BX950229_1120 1/1 390 458 .. 1 87 [] 78.2 3.4e-22

Alignments of top-scoring domains:
BX950229_1303: domain 1 of 1, from 412 to 480: score 82.7, E = 1.8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kse++a +sHELRTPLt+I+gy+el l++ ++ ++ q
BX950229_1 412 LKSELIAVVSHELRTPLTSIKGYVELVLDGTM------GAINDSQ-- 450

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+++++ + rl+rLi+ +Ldls+ie g
BX950229_1 451 ----------KKCLQVADDNIVRLRRLIESMLDLSKIERG 480

BX950229_1120: domain 1 of 1, from 390 to 458: score 78.2, E = 3.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kse l+ +sHELRTPLtaI+gy+elL++e ++lse+q
BX950229_1 390 LKSEILSIVSHELRTPLTAILGYVELLKDETA------GKLSEKQ-- 428

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++++i + ++rl r+ +++ dl ++
BX950229_1 429 ----------KEFISVISENSDRLKRITDNMSDLVTVDNK 458


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 1 0|=
-14 9 0|==
-13 43 1|*=======
-12 105 39|======*===========
-11 227 204|=================================*====
-10 345 378|==========================================================*
-9 325 391|======================================================= *
-8 259 292|============================================ *
-7 165 184|============================ *
-6 97 106|=================*
-5 66 58|=========*=
-4 31 31|=====*
-3 21 16|==*=
-2 16 8|=*=
-1 5 4|*
0 1 2|*
1 3 1|*
> 2 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 141.5066
P(chi-square) = 2.07e-25

Total sequences searched: 1722

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: