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264 projects found  

1 accessions found for Pectobacterium atrosepticum SCRI1043  

Data for BX950851  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: BX950851.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
BX950851_1097 CDS_1261506-1262828 92.2 9.3e-26 1
BX950851_3545 CDS_4008599-4011400 89.8 4.6e-25 1
BX950851_1188 CDS_1366254-1369109 78.9 5.8e-22 1
BX950851_0310 CDS_363219-365588 71.8 6e-20 1
BX950851_3231 CDS_3644657-3643221 70.8 1.1e-19 1
BX950851_4285 CDS_4829896-4831266 60.7 8.3e-17 1
BX950851_3162 CDS_3568380-3569747 60.5 9.4e-17 1
BX950851_0026 CDS_34917-33868 60.3 1e-16 1
BX950851_0007 CDS_9017-7668 57.0 9e-16 1
BX950851_4080 CDS_4578723-4577365 56.7 1.1e-15 1
BX950851_1325 CDS_1518297-1515565 55.2 2.9e-15 1
BX950851_0878 CDS_992153-993517 50.6 5.9e-14 1
BX950851_4018 CDS_4511594-4512688 47.2 5.4e-13 1
BX950851_1989 CDS_2286405-2285092 42.6 1.1e-11 1
BX950851_0776 CDS_859318-860817 28.3 1.2e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
BX950851_1097 1/1 203 269 .. 1 87 [] 92.2 9.3e-26
BX950851_3545 1/1 292 357 .. 1 87 [] 89.8 4.6e-25
BX950851_1188 1/1 468 533 .. 1 87 [] 78.9 5.8e-22
BX950851_0310 1/1 282 347 .. 1 87 [] 71.8 6e-20
BX950851_3231 1/1 252 320 .. 1 87 [] 70.8 1.1e-19
BX950851_4285 1/1 238 300 .. 1 87 [] 60.7 8.3e-17
BX950851_3162 1/1 232 296 .. 1 87 [] 60.5 9.4e-17
BX950851_0026 1/1 129 186 .. 1 79 [. 60.3 1e-16
BX950851_0007 1/1 236 302 .. 1 87 [] 57.0 9e-16
BX950851_4080 1/1 232 292 .. 1 87 [] 56.7 1.1e-15
BX950851_1325 1/1 671 738 .. 1 87 [] 55.2 2.9e-15
BX950851_0878 1/1 235 298 .. 1 87 [] 50.6 5.9e-14
BX950851_4018 1/1 143 203 .. 1 87 [] 47.2 5.4e-13
BX950851_1989 1/1 211 271 .. 1 87 [] 42.6 1.1e-11
BX950851_0776 1/1 281 347 .. 1 87 [] 28.3 1.2e-07

Alignments of top-scoring domains:
BX950851_1097: domain 1 of 1, from 203 to 269: score 92.2, E = 9.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e+++e ++l++ r
BX950851_1 203 ARRNFFANVSHELRTPLTVLQGYLEMMQE---------DTLDAALR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+t++++++r++ L+ +lL+lsriea
BX950851_1 240 ----------GKALSTMQEQTRRMDGLVKQLLTLSRIEAA 269

BX950851_3545: domain 1 of 1, from 292 to 357: score 89.8, E = 4.6e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l+ t+l+ q
BX950851_3 292 IKSEFLANMSHELRTPLNGVIGFTRQTLK---------TPLNTTQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl ti+r+a+ ll++ind+Ld+s++eag
BX950851_3 328 ----------TDYLLTIERSANNLLNIINDVLDFSKLEAG 357

BX950851_1188: domain 1 of 1, from 468 to 533: score 78.9, E = 5.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ l+ +
BX950851_1 468 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KSLPKDA-- 503

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +++ ll++i+d+Ld+s+ie++
BX950851_1 504 ----------NRLVVAMNNSSSLLLKIISDILDFSKIESE 533

BX950851_0310: domain 1 of 1, from 282 to 347: score 71.8, E = 6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ t l+ eq
BX950851_0 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TQLDLEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ ++ + e
BX950851_0 318 ----------QKYLKTIHVSAITLGNIFNDVIEMDKQERR 347

BX950851_3231: domain 1 of 1, from 252 to 320: score 70.8, E = 1.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl+++sHEL+TPL+++r +elL +e+ ++l+++q
BX950851_3 252 QRHEFLRHISHELKTPLASLREGTELLADEV------VGPLTADQ-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++++++++++ll+Li++lLd+ r a
BX950851_3 291 ----------KEVVDILDSSSRHLLQLIDQLLDYNRKLAD 320

BX950851_4285: domain 1 of 1, from 238 to 300: score 60.7, E = 8.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l+++sHELRTPLt +++++ lL++++ +e +e
BX950851_4 238 AQQRLLSDISHELRTPLTRLQLATALLRRRQ-------GEGNE---- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i+ e++rl+++indlL lsr ++
BX950851_4 274 -------------LNRIEMETQRLDSMINDLLVLSRNQHK 300

BX950851_3162: domain 1 of 1, from 232 to 296: score 60.5, E = 9.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a++sHELRTPL+++rg +e+L++++ + ++
BX950851_3 232 SRRAFMADVSHELRTPLAVLRGELEALQDGV-------RKPDAHS-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++++e+ l +L++dl +l+ + g
BX950851_3 270 -------------LHSLQSEVATLTKLVDDLHQLTLSDRG 296

BX950851_0026: domain 1 of 1, from 129 to 186: score 60.3, E = 1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
BX950851_0 129 AARDLVRGLAHEIKNPLGGLRGAAQLLAK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
BX950851_0 165 ----------TEYTKVIIEQADRLRNLVDRLL 186

BX950851_0007: domain 1 of 1, from 236 to 302: score 57.0, E = 9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PL+a++ +e+++ ++ +e r
BX950851_0 236 RERRFTSDAAHELRSPLAALKVQTEVAQL---------AHDDEAMR- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l +++ ++r rL+++lL+lsr++a+
BX950851_0 273 ----------RHALMNLDKGIDRATRLVDQLLTLSRLDAE 302

BX950851_4080: domain 1 of 1, from 232 to 292: score 56.7, E = 1.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ + e+
BX950851_4 232 DRTLLMAGVSHDLRTPLTRIRLATEMMGK--------------ED-- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++Ld+ r +++
BX950851_4 263 ----------DYLAESINKDIEECNAIIEQFLDYLRTGQE 292

BX950851_1325: domain 1 of 1, from 671 to 738: score 55.2, E = 2.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l +e s+
BX950851_1 671 LRNSLLAALSHDLRTPLTVLFGQAEILTLNLA------SEGSP---- 707

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ + i++ + rL+n+lLd++ri++
BX950851_1 708 ---------YAQQANQIRQHILNTTRLVNNLLDMARIQSD 738

BX950851_0878: domain 1 of 1, from 235 to 298: score 50.6, E = 5.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l ++sHELR PL+ +++++ l + +++ +
BX950851_0 235 AREQLLHDVSHELRSPLARLQLAIGLVRQ------------NPDNL- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i+rea ++++i +lL+lsr e+
BX950851_0 269 ----------ENSLQRIEREALLMDKMIGELLTLSRTENS 298

BX950851_4018: domain 1 of 1, from 143 to 203: score 47.2, E = 5.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a+++HELRTPL++Ir+++el +
BX950851_4 143 RDRQFTADVAHELRTPLAGIRLHLELHQQ------------------ 171

peLRledpeyreylet..ilreaerllrLindlLdlsrieag<-*
+ ++ +++++ ++ + + +++lL+l+r +++
BX950851_4 172 ----------QHQIDCspLIKRIDKMAKTVEQLLQLARVGQE 203

BX950851_1989: domain 1 of 1, from 211 to 271: score 42.6, E = 1.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ n++HELRTPL +r + + + l+e+++
BX950851_1 211 SKKQLIDNIAHELRTPLVRLRYRLAMSDN-----------LTEDEQ- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + r++ +l++Li++lL+++r++ +
BX950851_1 246 --------------QALNRDIGQLEALIDELLTYARLDRP 271

BX950851_0776: domain 1 of 1, from 281 to 347: score 28.3, E = 1.2e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++++HELRTPLt ++ + L e ++ l+ +
BX950851_0 281 QVRNTSSHVAHELRTPLTHLQNRLFNLTE--------RAGLDNDV-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ + +e++ +l L + ++ + ie+g
BX950851_0 318 ----------RDELNLAVDEVHKILGLFRTVMRIGEIESG 347


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-14 16 0|==
-13 52 3|*===
-12 208 102|======*=======
-11 453 530|=============================== *
-10 768 983|==================================================== *
-9 846 1015|========================================================= *
-8 708 760|================================================ *
-7 533 479|===============================*====
-6 348 275|==================*=====
-5 208 151|==========*===
-4 136 80|=====*====
-3 71 42|==*==
-2 38 22|=*=
-1 32 11|*==
0 16 6|*=
1 7 3|*
2 10 1|*
3 2 0|=
4 3 0|=
5 0 0|
> 6 17 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 363.8776
P(chi-square) = 0

Total sequences searched: 4492

Whole sequence top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: