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Classification of phyla is from NCBI page
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132 projects found  

6 accessions found for Gluconobacter oxydans 621H  

Data for CP000009  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000009.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000009_0679 CDS_764092-762878 74.3 6.3e-21 1
CP000009_0793 CDS_887311-885473 64.4 3.9e-18 1
CP000009_0448 CDS_492056-489669 53.4 5.2e-15 1
CP000009_0115 CDS_137726-136335 48.2 1.5e-13 1
CP000009_0753 CDS_845174-843870 38.4 9.2e-11 1
CP000009_0253 CDS_286393-284390 37.5 1.6e-10 1
CP000009_1541 CDS_1752750-1751134 36.9 2.4e-10 1
CP000009_0623 CDS_694634-691002 36.5 3.3e-10 1
CP000009_0804 CDS_898384-896951 29.1 3.9e-08 1
CP000009_0378 CDS_416541-415111 27.4 1.2e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000009_0679 1/1 159 226 .. 1 87 [] 74.3 6.3e-21
CP000009_0793 1/1 373 438 .. 1 87 [] 64.4 3.9e-18
CP000009_0448 1/1 530 601 .. 1 87 [] 53.4 5.2e-15
CP000009_0115 1/1 254 321 .. 1 87 [] 48.2 1.5e-13
CP000009_0753 1/1 209 261 .. 1 81 [. 38.4 9.2e-11
CP000009_0253 1/1 291 357 .. 1 87 [] 37.5 1.6e-10
CP000009_1541 1/1 323 381 .. 1 87 [] 36.9 2.4e-10
CP000009_0623 1/1 834 902 .. 1 87 [] 36.5 3.3e-10
CP000009_0804 1/1 246 312 .. 1 87 [] 29.1 3.9e-08
CP000009_0378 1/1 247 313 .. 1 87 [] 27.4 1.2e-07

Alignments of top-scoring domains:
CP000009_0679: domain 1 of 1, from 159 to 226: score 74.3, E = 6.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+a++sHELRTPL++++g++++L+ + ++ r
CP000009_0 159 MRMDFVAHASHELRTPLASLSGFIDALQG--------AAGENPVMR- 196

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+++++++erl rLi++lL lsr +a
CP000009_0 197 ----------HQFLDIMRQQSERLKRLIDRLLYLSRVQAH 226

CP000009_0793: domain 1 of 1, from 373 to 438: score 64.4, E = 3.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a++sHE+++PL++Ir ++e+L + e
CP000009_0 373 DIERFAADVSHEIKNPLSSIRSAIETLPR---------IQIAERR-- 408

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +i ++++rl+rLi d+ d sri+a+
CP000009_0 409 ----------ERLLGIINSDVKRLDRLITDISDASRIDAE 438

CP000009_0448: domain 1 of 1, from 530 to 601: score 53.4, E = 5.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I+++ae L++++ +++ + ++e+
CP000009_0 530 AWADVARRVAHEIKNPLTPIQLAAERLKRRF----LKEIHSDPET-- 570

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ++++ti r++ + r+++++ ++r+ ++
CP000009_0 571 ---------YTQLVDTIVRQVGDIGRMVDEFSAFARMPQP 601

CP000009_0115: domain 1 of 1, from 254 to 321: score 48.2, E = 1.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ la++sH+LRTPLt +r+++ ++ + ++ +e++
CP000009_0 254 QRTAVLAGVSHDLRTPLTRLRLTVAMIPT--------FGPIRAETL- 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l + ++e ++rLi L ++r e
CP000009_0 292 ----------KPDLADMVADIEDMERLIGSYLSFARGEGA 321

CP000009_0753: domain 1 of 1, from 209 to 261: score 38.4, E = 9.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ la++sH+LRTPLt +r+ + L +
CP000009_0 209 DRTQALAAVSHDLRTPLTRLRLRCGFLSD------------------ 237

peLRledpeyreyletilreaerllrLindlLdl<-*
e+ i+ +++ +++++n +L +
CP000009_0 238 ----------GEAQAAIEADLDEMEAMVNGILAY 261

CP000009_0253: domain 1 of 1, from 291 to 357: score 37.5, E = 1.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++ +++H++++ L+aI+g +elL++ +e +e
CP000009_0 291 SLGTLAGGIAHDFNNLLAAISGSLELLED--------IAEFDEAS-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ + ++a+r L ++lL++ r ++
CP000009_0 328 ----------LALLRNAADSAQRGAVLTRRLLQFGRPREA 357

CP000009_1541: domain 1 of 1, from 323 to 381: score 36.9, E = 2.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l ++ H+LRTP+t +++ ae + +
CP000009_1 323 DRTLMLTAIGHDLRTPITRLKLRAEFIDD------------------ 351

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +++l +++ ++++++ L + r a
CP000009_1 352 ----------EELRNKVLADLDEMEAMVSATLAFGRDSAS 381

CP000009_0623: domain 1 of 1, from 834 to 902: score 36.5, E = 3.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I g +el+ +l + +++
CP000009_0 834 AVGQLTGGLAHDFNNLLAGIGGGLELIGLRLA------QGRTDGL-- 872

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+ +++++r +L +lL +sr ++
CP000009_0 873 ----------GRYIAASQDAVRRAASLTHRLLAFSRRQTL 902

CP000009_0804: domain 1 of 1, from 246 to 312: score 29.1, E = 3.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++H+LRTP++ r+ +e + + t+ s+e++
CP000009_0 246 GVKQVSNAIAHDLRTPIARARARLEDANR---------TATSAEEL- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++ +++r ++ + lL ++++eag
CP000009_0 283 ----------HAAIDRAVMDLDRVTSIFEALLRIAQLEAG 312

CP000009_0378: domain 1 of 1, from 247 to 313: score 27.4, E = 1.2e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +++H+LRTPL+ +++ +e + + ++ +
CP000009_0 247 EIRDVGNDIAHDLRTPLARVKARLERVSA---------ITNDPAAL- 283

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++e++ ++e++ + i lL + ie+g
CP000009_0 284 ----------QGAIERAALDLEQCFSVITALLRIGEIENG 313


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 5 0|=
-13 19 1|*==
-12 86 55|======*===
-11 233 288|========================== *
-10 404 534|============================================= *
-9 484 552|====================================================== *
-8 445 413|=============================================*====
-7 300 260|============================*=====
-6 200 149|================*======
-5 101 82|=========*==
-4 68 44|====*===
-3 23 23|==*
-2 25 12|=*=
-1 12 6|*=
0 4 3|*
1 6 1|*
2 1 0|=
3 3 0|=
> 4 13 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 128.4296
P(chi-square) = 3.617e-22

Total sequences searched: 2432

Whole sequence top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: