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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

2 accessions found for Burkholderia mallei ATCC 23344  

Data for CP000010  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000010.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000010_1493 CDS_1818638-1820560 59.4 2.4e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000010_1493 1/1 439 507 .. 1 70 [] 59.4 2.4e-17

Alignments of top-scoring domains:
CP000010_1493: domain 1 of 1, from 439 to 507: score 59.4, E = 2.4e-17
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.earealde
ER+ A+ LHDs++QsL ++lq+++++ ++ + d+ are + +
CP000010_1 439 ERNLVAQGLHDSIAQSLNFVNLQTQMLADAI--AHDNLaDAREIVPM 483

irelarealaevRrllgdLRpaal<-*
+++ +++++a+vR+ll ++R+
CP000010_1 484 LKHGVEQGYADVRELLLNFRTRLT 507


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 9 0|=
-13 30 0|===
-12 119 33|===*========
-11 106 274|=========== *
-10 295 637|============================== *
-9 534 723|====================================================== *
-8 421 557|=========================================== *
-7 393 350|==================================*=====
-6 303 198|===================*===========
-5 352 106|==========*=========================
-4 151 55|=====*==========
-3 112 28|==*=========
-2 68 14|=*=====
-1 32 7|*===
0 18 3|*=
1 17 1|*=
2 16 0|==
3 9 0|=
4 2 0|=
5 2 0|=
6 1 0|=
7 2 0|=
8 2 0|=
9 0 0|
> 10 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1900.0897
P(chi-square) = 0

Total sequences searched: 2996

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: