Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

2 accessions found for Burkholderia mallei ATCC 23344  

Data for CP000011  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000011.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000011_1981 CDS_2263491-2264891 65.4 2.8e-19 1
CP000011_0863 CDS_923336-924727 54.6 4.1e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000011_1981 1/1 253 323 .. 1 70 [] 65.4 2.8e-19
CP000011_0863 1/1 256 324 .. 1 70 [] 54.6 4.1e-16

Alignments of top-scoring domains:
CP000011_1981: domain 1 of 1, from 253 to 323: score 65.4, E = 2.8e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe...eareal
ERaR+ARELHD+++Q++ ++kl+ e a+ +l + p+++++a++al
CP000011_1 253 ERARLARELHDGISQMMVSAKLMCESALERL--AHLPArenAAQAAL 297

deirelarealaevRrllgdLRpaal<-*
+ + ++l+evRr+ ++LRp+ l
CP000011_1 298 SKGIARLGDTLREVRRISHALRPTML 323

CP000011_0863: domain 1 of 1, from 256 to 324: score 54.6, E = 4.1e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe..eareald
E +RIARELHD +gQ+L+a+k+ + l+ l kd++ +l
CP000011_0 256 EKTRIARELHDDLGQQLTALKMAVTLVDNEL---KDAGwaSRTSRLP 299

eirelarealaevRrllgdLRpaal<-*
++ +l+ + l+ vRr++ dLRp l
CP000011_0 300 NVYALIGQLLDSVRRIAADLRPVML 324


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 8 0|==
-13 14 0|===
-12 78 22|===*=========
-11 78 185|============= *
-10 208 431|=================================== *
-9 341 489|========================================================= *
-8 294 377|================================================= *
-7 270 237|=======================================*=====
-6 181 134|======================*========
-5 254 72|===========*===============================
-4 109 37|======*============
-3 73 19|===*=========
-2 34 9|=*====
-1 37 5|*======
0 15 2|*==
1 9 1|*=
2 5 0|=
3 3 0|=
4 4 0|=
5 2 0|=
6 7 0|==
7 0 0|
8 2 0|=
9 0 0|
> 10 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1403.2527
P(chi-square) = 0

Total sequences searched: 2029

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: