Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

3 accessions found for Vibrio fischeri ES114  

Data for CP000020  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000020.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000020_1908 CDS_2145474-2147165 55.8 2.4e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000020_1908 1/1 365 433 .. 1 70 [] 55.8 2.4e-16

Alignments of top-scoring domains:
CP000020_1908: domain 1 of 1, from 365 to 433: score 55.8, E = 2.4e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe..eareald
ER IARELHDs++QsLs +k+q+ l++r+l + + ++l
CP000020_1 365 ERSTIARELHDSLAQSLSYLKIQTTLLKRQL---EKCDciNTSTTLV 408

eirelarealaevRrllgdLRpaal<-*
e+ e ++ a++++R ll ++R ++
CP000020_1 409 ELDEGLKSAYSQLRGLLNTFRLTIN 433


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 12 0|==
-13 67 0|=======
-12 141 28|==*============
-11 196 236|==================== *
-10 505 547|=================================================== *
-9 559 621|======================================================== *
-8 373 479|====================================== *
-7 267 301|=========================== *
-6 161 170|================*
-5 122 91|=========*===
-4 76 47|====*===
-3 39 24|==*=
-2 20 12|=*
-1 21 6|*==
0 9 3|*
1 5 1|*
2 0 0|
> 3 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 555.6827
P(chi-square) = 0

Total sequences searched: 2575

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: