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Classification of phyla is from NCBI page
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264 projects found  

3 accessions found for Vibrio fischeri ES114  

Data for CP000021  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000021.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000021_0360 CDS_404747-407341 102.0 4.2e-29 1
CP000021_1016 CDS_1143598-1146192 97.2 9.5e-28 1
CP000021_1025 CDS_1156533-1158833 87.4 5.6e-25 1
CP000021_0237 CDS_263725-260942 85.9 1.5e-24 1
CP000021_0072 CDS_74932-76659 84.0 5.2e-24 1
CP000021_0233 CDS_257637-255427 74.1 3.4e-21 2
CP000021_0178 CDS_201595-200255 63.8 2.8e-18 1
CP000021_0182 CDS_203630-205018 49.8 2.5e-14 1
CP000021_0265 CDS_298364-297108 46.2 2.7e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000021_0360 1/1 352 417 .. 1 87 [] 102.0 4.2e-29
CP000021_1016 1/1 356 421 .. 1 87 [] 97.2 9.5e-28
CP000021_1025 1/1 240 305 .. 1 87 [] 87.4 5.6e-25
CP000021_0237 1/1 402 467 .. 1 87 [] 85.9 1.5e-24
CP000021_0072 1/1 212 277 .. 1 87 [] 84.0 5.2e-24
CP000021_0233 1/2 368 433 .. 1 87 [] 73.9 3.9e-21
CP000021_0178 1/1 227 293 .. 1 87 [] 63.8 2.8e-18
CP000021_0182 1/1 239 303 .. 1 87 [] 49.8 2.5e-14
CP000021_0265 1/1 221 287 .. 1 87 [] 46.2 2.7e-13

Alignments of top-scoring domains:
CP000021_0360: domain 1 of 1, from 352 to 417: score 102.0, E = 4.2e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++I+g++++L e t+l++ q
CP000021_0 352 AKSSFLANMSHEIRTPLNGIIGMSDILTE---------TDLTPVQ-- 387

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+eti+ +++ ll Lind+Ldls+ie+g
CP000021_0 388 ----------SEYVETIDTSSQTLLLLINDILDLSKIESG 417

CP000021_1016: domain 1 of 1, from 356 to 421: score 97.2, E = 9.5e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ flan+sHE+RTPL++I+g++ +L e t+l++ q
CP000021_1 356 AKTTFLANMSHEIRTPLNGIIGMSGVLAE---------TKLTPIQ-- 391

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+ +++ ll Lind+Ldls+ieag
CP000021_1 392 ----------LDYLNTIETSSQTLLVLINDILDLSKIEAG 421

CP000021_1025: domain 1 of 1, from 240 to 305: score 87.4, E = 5.6e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sHE+RTP++a++g++ +L++ t+l + q
CP000021_1 240 SKSRFLASMSHEIRTPMNAVLGLLAILKD---------TTLKPNQ-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++t+ +++e ll++ind+Ld+sr+ea+
CP000021_1 276 ----------KELVNTATDSSELLLSIINDILDFSRMEAN 305

CP000021_0237: domain 1 of 1, from 402 to 467: score 85.9, E = 1.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHELRTPL++I+g+a++++ ++ eq
CP000021_0 402 AKSTFLATMSHELRTPLNGILGMAQIIES---------NIKDKEQ-- 437

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ +l+++++ll L+n++Ld+s+ie++
CP000021_0 438 ----------HKQIKMLLESGDHLLFLLNEILDFSKIEQN 467

CP000021_0072: domain 1 of 1, from 212 to 277: score 84.0, E = 5.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a++ HELRTPL++++g ael+++ te ++ q
CP000021_0 212 ATRDFVAMINHELRTPLNGLLGSAELMED---------TEITDYQ-- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++leti+++++ l+ +indlLd+s++ ag
CP000021_0 248 ----------KKLLETIHQSGQMLRIIINDLLDFSKMSAG 277

CP000021_0233: domain 1 of 2, from 368 to 433: score 73.9, E = 3.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+f+an+sHELRTPL+aI+g++ L e e ++e+
CP000021_0 368 NKSKFIANISHELRTPLNAILGLSLYLIE---------KEENSEK-- 403

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ let+ ++++ ll+++nd+Ldls+iea
CP000021_0 404 ----------KKTLETLNKAGQGLLEMVNDILDLSKIEAD 433

CP000021_0178: domain 1 of 1, from 227 to 293: score 63.8, E = 2.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f ++++HEL+TPL+ I++ +++ l +++++ +
CP000021_0 227 RLSDFSSDIAHELKTPLSNIMTQTHVTLS---------QPRTPHE-- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e+l++ l+e+er+++ ind L l++ e+
CP000021_0 263 ---------YQEILSSNLEELERINKTINDTLYLAKSEND 293

CP000021_0182: domain 1 of 1, from 239 to 303: score 49.8, E = 2.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++sHELRTPL+ ++++lL++ + ++ +
CP000021_0 239 KQQRLIRDVSHELRTPLARHNLALHLLKK----------KVAPDYI- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++++e++ +++L+ ++L++sr+e+
CP000021_0 275 -----------HLVNRLENESNEMNDLVGEILEFSRLENS 303

CP000021_0265: domain 1 of 1, from 221 to 287: score 46.2, E = 2.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ef + +sHELRTP+ +I+g a+lL + ++++
CP000021_0 221 REKEFSRFASHELRTPIMVIQGSADLLAK--------VPNQPNVA-- 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++++++e + L + +L l + + +
CP000021_0 258 ----------LKAINRLHQASEEMTLLTETFLLLGKQDIE 287


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-14 6 0|==
-13 10 0|==
-12 52 26|=====*=====
-11 108 138|====================== *
-10 225 257|============================================= *
-9 237 266|================================================ *
-8 207 199|=======================================*==
-7 111 125|======================= *
-6 74 72|==============*
-5 58 39|=======*====
-4 28 21|====*=
-3 16 11|==*=
-2 12 5|*==
-1 9 3|*=
0 3 1|*
1 2 0|=
2 0 0|
> 3 14 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 59.0848
P(chi-square) = 5.398e-09

Total sequences searched: 1172

Whole sequence top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: