Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150  

Data for CP000026  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000026.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000026_2634 CDS_2925521-2928277 100.2 4.9e-28 1
CP000026_2171 CDS_2421493-2420198 88.2 1.2e-24 1
CP000026_1361 CDS_1532699-1535461 82.3 5.5e-23 1
CP000026_0556 CDS_671675-674521 80.6 1.7e-22 1
CP000026_2981 CDS_3300291-3297955 78.9 5.1e-22 1
CP000026_3430 CDS_3814515-3817250 72.8 2.7e-20 1
CP000026_0283 CDS_339106-340491 69.6 2.2e-19 1
CP000026_3628 CDS_4047785-4046412 67.0 1.2e-18 1
CP000026_0694 CDS_815654-814251 63.5 1.2e-17 1
CP000026_3723 CDS_4160742-4162139 62.5 2.2e-17 1
CP000026_1901 CDS_2120846-2123530 61.1 5.9e-17 1
CP000026_3576 CDS_3993389-3992340 60.3 9.8e-17 1
CP000026_4083 CDS_4572724-4574148 59.8 1.3e-16 1
CP000026_1635 CDS_1814680-1816044 57.5 6e-16 1
CP000026_2843 CDS_3152034-3153383 55.9 1.7e-15 1
CP000026_3140 CDS_3465323-3463971 54.9 3.3e-15 1
CP000026_3814 CDS_4285642-4284572 47.7 3.7e-13 1
CP000026_1287 CDS_1464585-1465889 47.4 4.3e-13 1
CP000026_2465 CDS_2749601-2748186 36.6 5e-10 1
CP000026_1367 CDS_1540917-1539169 31.5 1.4e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000026_2634 1/1 292 357 .. 1 87 [] 100.2 4.9e-28
CP000026_2171 1/1 203 269 .. 1 87 [] 88.2 1.2e-24
CP000026_1361 1/1 395 460 .. 1 87 [] 82.3 5.5e-23
CP000026_0556 1/1 469 534 .. 1 87 [] 80.6 1.7e-22
CP000026_2981 1/1 282 347 .. 1 87 [] 78.9 5.1e-22
CP000026_3430 1/1 444 509 .. 1 87 [] 72.8 2.7e-20
CP000026_0283 1/1 234 302 .. 1 87 [] 69.6 2.2e-19
CP000026_3628 1/1 238 300 .. 1 87 [] 67.0 1.2e-18
CP000026_0694 1/1 240 304 .. 1 87 [] 63.5 1.2e-17
CP000026_3723 1/1 246 312 .. 1 87 [] 62.5 2.2e-17
CP000026_1901 1/1 663 730 .. 1 87 [] 61.1 5.9e-17
CP000026_3576 1/1 129 186 .. 1 79 [. 60.3 9.8e-17
CP000026_4083 1/1 255 320 .. 1 87 [] 59.8 1.3e-16
CP000026_1635 1/1 236 302 .. 1 87 [] 57.5 6e-16
CP000026_2843 1/1 236 302 .. 1 87 [] 55.9 1.7e-15
CP000026_3140 1/1 233 293 .. 1 87 [] 54.9 3.3e-15
CP000026_3814 1/1 142 202 .. 1 87 [] 47.7 3.7e-13
CP000026_1287 1/1 212 272 .. 1 87 [] 47.4 4.3e-13
CP000026_2465 1/1 246 311 .. 1 87 [] 36.6 5e-10
CP000026_1367 1/1 347 416 .. 1 87 [] 31.5 1.4e-08

Alignments of top-scoring domains:
CP000026_2634: domain 1 of 1, from 292 to 357: score 100.2, E = 4.9e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l l+ tel++ q
CP000026_2 292 IKSEFLANMSHELRTPLNGVIGFTRLTLK---------TELNPTQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ti+r+a+ ll++ind+Ld+s++eag
CP000026_2 328 ----------RDHLNTIERSANNLLAIINDVLDFSKLEAG 357

CP000026_2171: domain 1 of 1, from 203 to 269: score 88.2, E = 1.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e+++e ++l r
CP000026_2 203 ARRNFFANVSHELRTPLTVLQGYLEMMQE---------QALEGAMR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t+++++ r++ L+ +lL+ls+iea
CP000026_2 240 ----------EKALHTMREQTYRMEGLVKQLLTLSKIEAA 269

CP000026_1361: domain 1 of 1, from 395 to 460: score 82.3, E = 5.5e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks l +sHELRTP+++++g++elL++ t+l+ eq
CP000026_1 395 RKSIHLTVISHELRTPMNGVLGAIELLQT---------TPLNIEQ-- 430

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +t+++++ +ll++in+lLd+srie+g
CP000026_1 431 ----------QGLADTARNCTLSLLAIINNLLDFSRIESG 460

CP000026_0556: domain 1 of 1, from 469 to 534: score 80.6, E = 1.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ el+
CP000026_0 469 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KELPKGV-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +++ ll++i+d+Ld+s+ie++
CP000026_0 505 ----------DRLVTAMNNSSSLLLKIISDILDFSKIESE 534

CP000026_2981: domain 1 of 1, from 282 to 347: score 78.9, E = 5.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ t+l++eq
CP000026_2 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TDLTAEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ d+ ++e
CP000026_2 318 ----------EKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

CP000026_3430: domain 1 of 1, from 444 to 509: score 72.8, E = 2.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL +I+g+++lL + +l +
CP000026_3 444 AKSTFLAAMSHEIRTPLYGILGTVQLLAD---------KPLMANY-- 479

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ i +++e+ll+++nd+Ld+s ie g
CP000026_3 480 ----------RDDLQAINDSGESLLAILNDILDYSAIEVG 509

CP000026_0283: domain 1 of 1, from 234 to 302: score 69.6, E = 2.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +fl++lsHEL+TPL+++r +elL +++ ++l++eq
CP000026_0 234 QRHQFLRHLSHELKTPLASMREGTELLADQV------VGPLTPEQ-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++++++++ l++Li++lLd+ r
CP000026_0 273 ----------KEVVDILDDSSRNLQKLIEQLLDYNRKLVD 302

CP000026_3628: domain 1 of 1, from 238 to 300: score 67.0, E = 1.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l+++sHELRTPLt +++ + lL++ +++
CP000026_3 238 SQQRLLSDISHELRTPLTRLQLGTALLRR---------RGGESKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL +sr ++
CP000026_3 274 -------------LERIETEAQRLDSMINDLLVMSRNQQK 300

CP000026_0694: domain 1 of 1, from 240 to 304: score 63.5, E = 1.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rg +e++++++ ++e
CP000026_0 240 MRRDFMADISHELRTPLAVLRGELEAIQDGV-------RQFTPES-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ l +L++dl +ls ++g
CP000026_0 278 -------------VTSLQAEVGTLTKLVDDLHQLSLSDEG 304

CP000026_3723: domain 1 of 1, from 246 to 312: score 62.5, E = 2.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HE+R+PL++I+g+a+ e +t+++ e
CP000026_3 246 AMGHLAAGVAHEIRNPLSSIKGLAKYFAE--------RTPAGGES-- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +++ +ea+rl+r +++lL+l + +
CP000026_3 283 ----------HELAQVMAKEADRLNRVVSELLELVKPAHL 312

CP000026_1901: domain 1 of 1, from 663 to 730: score 61.1, E = 5.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l + +++++
CP000026_1 663 IRNALLAALSHDLRTPLTVLFGQAEILTLDL-------ASAGSPH-- 700

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i++ + rL+n+lLd++ri++g
CP000026_1 701 ----------ARQASEIRQHILNTTRLVNNLLDMARIQSG 730

CP000026_3576: domain 1 of 1, from 129 to 186: score 60.3, E = 9.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CP000026_3 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
CP000026_3 165 ----------TEYTKVIIEQADRLRNLVDRLL 186

CP000026_4083: domain 1 of 1, from 255 to 320: score 59.8, E = 1.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ + +l HEL+ PL+aIrg+ae+L+e ++ +
CP000026_4 255 EIEQYVYALTHELKSPLAAIRGAAEILRE---------GPPADVV-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e il + r+++L++ lL +r+e+
CP000026_4 291 ----------TRFTENILAQNTRMQALVETLLRQARLENR 320

CP000026_1635: domain 1 of 1, from 236 to 302: score 57.5, E = 6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +l+HELRTP++ ++g +++l +e+s+e+
CP000026_1 236 RLNQFADDLAHELRTPVNILLGKNQVMLS---------QERSAEE-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++l ++e+e l+rL +++L l+r+e++
CP000026_1 272 ---------YQQALVDNIEELEGLSRLTENILFLARAEHQ 302

CP000026_2843: domain 1 of 1, from 236 to 302: score 55.9, E = 1.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PL+a++ +e+++ + ++ r
CP000026_2 236 RERRFTSDAAHELRSPLAALKVQTEVAQL---------SGDDPLSR- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l ++ ++r rL+++lL+lsr+++
CP000026_2 273 ----------DKALTQLHAGIDRATRLVDQLLTLSRLDSL 302

CP000026_3140: domain 1 of 1, from 233 to 293: score 54.9, E = 3.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e e+
CP000026_3 233 DRTLLMAGVSHDLRTPLTRIRLATEMMGE--------------ED-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
CP000026_3 264 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 293

CP000026_3814: domain 1 of 1, from 142 to 202: score 47.7, E = 3.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+++r+++elL + t+
CP000026_3 142 NERLFTADVAHELRTPLSGVRLHLELLSK---------TH------- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++++ + +++lL+l+r ++
CP000026_3 173 ----------NVDVAPLIARLDQMMDSVSQLLQLARVGQS 202

CP000026_1287: domain 1 of 1, from 212 to 272: score 47.4, E = 4.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ ++ l++++
CP000026_1 212 SKKQLIDGIAHELRTPLVRLRYRLEMSEN-----------LTPPE-- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + r++ +l++Li++lL+++r++ +
CP000026_1 246 -------------SQALNRDIGQLEALIEELLTYARLDRP 272

CP000026_2465: domain 1 of 1, from 246 to 311: score 36.6, E = 5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a++sH+L+TPL+++++ a ++l+ + + +
CP000026_2 246 RQERFSADASHQLKTPLAVLKTQAAVALA----------SQHPHH-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e l+ + +++ +L ++lL+ls +
CP000026_2 281 ---------WYESLQAMSVTLDSTIQLTERLLQLSAVKHK 311

CP000026_1367: domain 1 of 1, from 347 to 416: score 31.5, E = 1.4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++ +HEL++PL+aIr ya+ +l +l +++e++ l
CP000026_1 347 VLGEMTSGFAHELNQPLSAIRHYAQGCLIRL-------RAADEQHPL 386

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+le i+++a+r + +++l+ +g
CP000026_1 387 ----------LPALEQIDQQAQRGADTLRNLRHWVSQAQG 416


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 2 0|=
-14 27 0|===
-13 64 3|*====
-12 215 93|=======*=========
-11 445 485|=================================== *
-10 682 900|===================================================== *
-9 763 929|==========================================================*
-8 690 695|=====================================================*
-7 494 438|=================================*====
-6 282 252|===================*==
-5 204 138|==========*=====
-4 95 74|=====*==
-3 34 39|==*
-2 26 20|=*
-1 22 10|*=
0 13 5|*
1 6 2|*
2 5 1|*
3 2 0|=
4 0 0|
> 5 22 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 314.8185
P(chi-square) = 0

Total sequences searched: 4093

Whole sequence top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: