Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150  

Data for CP000026  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000026.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000026_1036 CDS_1177843-1176047 74.3 1.3e-21 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000026_1036 1/1 390 458 .. 1 70 [] 74.3 1.3e-21

Alignments of top-scoring domains:
CP000026_1036: domain 1 of 1, from 390 to 458: score 74.3, E = 1.3e-21
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++QsLs +k+q++ ++++ d pe re l +i
CP000026_1 390 ERATIARELHDSIAQSLSCMKMQVSCLQMQG--DVLPESSRELLSQI 434

relarealaevRrllgdLR.paal<-*
r ++ + a++R+ll+++R ++
CP000026_1 435 RNELNCSWAQLRELLTTFRlQLTE 458


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 31 0|===
-13 111 0|=========
-12 168 45|===*=========
-11 279 375|====================== *
-10 686 870|===================================================== *
-9 743 988|==========================================================*
-8 585 761|============================================= *
-7 500 478|====================================*==
-6 378 271|====================*=========
-5 288 145|===========*===========
-4 133 75|=====*=====
-3 78 39|==*===
-2 43 19|=*==
-1 30 10|*==
0 17 5|*=
1 10 2|*
2 4 1|*
3 3 0|=
4 1 0|=
5 3 0|=
> 6 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 850.2327
P(chi-square) = 0

Total sequences searched: 4093

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: