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Classification of phyla is from NCBI page
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14 projects found  

1 accessions found for Dehalococcoides ethenogenes 195  

Data for CP000027  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000027.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000027_0612 CDS_580498-577937 72.7 1.2e-20 1
CP000027_0122 CDS_128325-125140 70.5 4.7e-20 1
CP000027_0981 CDS_927054-923278 70.0 6.4e-20 1
CP000027_0131 CDS_133577-135322 68.4 1.9e-19 1
CP000027_1190 CDS_1130281-1128935 66.5 6.7e-19 1
CP000027_1019 CDS_959571-960992 64.9 1.9e-18 1
CP000027_1250 CDS_1179654-1178470 62.2 1e-17 2
CP000027_1482 CDS_1388437-1389615 50.1 2.9e-14 1
CP000027_0298 CDS_293917-292640 50.1 2.9e-14 1
CP000027_0164 CDS_167475-165964 48.6 7.7e-14 1
CP000027_0226 CDS_225243-223420 40.0 2.1e-11 1
CP000027_0171 CDS_172560-170770 37.3 1.3e-10 1
CP000027_0294 CDS_289764-288484 35.5 4e-10 1
CP000027_0308 CDS_302102-303706 32.4 3e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000027_0612 1/1 632 697 .. 1 87 [] 72.7 1.2e-20
CP000027_0122 1/1 829 894 .. 1 87 [] 70.5 4.7e-20
CP000027_0981 1/1 901 967 .. 1 87 [] 70.0 6.4e-20
CP000027_0131 1/1 359 426 .. 1 87 [] 68.4 1.9e-19
CP000027_1190 1/1 228 294 .. 1 87 [] 66.5 6.7e-19
CP000027_1019 1/1 246 310 .. 1 87 [] 64.9 1.9e-18
CP000027_1250 1/2 142 207 .. 1 87 [] 61.7 1.5e-17
CP000027_1482 1/1 168 233 .. 1 87 [] 50.1 2.9e-14
CP000027_0298 1/1 207 271 .. 1 87 [] 50.1 2.9e-14
CP000027_0164 1/1 277 342 .. 1 87 [] 48.6 7.7e-14
CP000027_0226 1/1 362 427 .. 1 87 [] 40.0 2.1e-11
CP000027_0171 1/1 356 422 .. 1 87 [] 37.3 1.3e-10
CP000027_0294 1/1 198 259 .. 1 83 [. 35.5 4e-10
CP000027_0308 1/1 302 367 .. 1 87 [] 32.4 3e-09

Alignments of top-scoring domains:
CP000027_0612: domain 1 of 1, from 632 to 697: score 72.7, E = 1.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e++a+l+HEL++PLt+++g++elL+e +l+e+
CP000027_0 632 SVGEMAAGLAHELNNPLTSVIGFSELLQE---------KKLPEDL-- 667

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++i +ea r + i++lL ++r ++
CP000027_0 668 ----------QRDIQIISQEALRAAEVIRNLLAFARRHEP 697

CP000027_0122: domain 1 of 1, from 829 to 894: score 70.5, E = 4.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e++++l+HE+++PLt+I g++elLl+ el e
CP000027_0 829 SVGELASGLAHEINNPLTGIVGFSELLLM---------NELEESI-- 864

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ti+rea r + +++lL+++r +++
CP000027_0 865 ----------KEDVQTIHREALRAAEVVRNLLTFARQQTP 894

CP000027_0981: domain 1 of 1, from 901 to 967: score 70.0, E = 6.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++a+++HE+++PLt+++g+a++L + +++l+++
CP000027_0 901 AIGEMAAGIAHEINNPLTGVIGFASILMD--------REDLPPDA-- 937

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l++i + ++r +++ ++L+++r +
CP000027_0 938 ----------MEQLQIINSGSQRVVEIVKRMLTFARQSKP 967

CP000027_0131: domain 1 of 1, from 359 to 426: score 68.4, E = 1.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTP++++++++e+L+e +++s+ ++
CP000027_0 359 VRRDFVANISHELRTPISSLKLLTETLQE---------GAASDAAVA 396

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++e+i+ e++ l +L+ +l dls ie+g
CP000027_0 397 ----------AGFIEKIHLEVDKLAQLVTELSDLSAIESG 426

CP000027_1190: domain 1 of 1, from 228 to 294: score 66.5, E = 6.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f++++sH+L+ PLt+Ir+ +el+l+ e++ e+
CP000027_1 228 SQHRFTSDASHDLKAPLTVIRAESELALR---------KERNTEE-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr++++ i +++e + +i+dl+ l+ ++ag
CP000027_1 264 ---------YRQAFKNIVKQVEKMALIIDDLMALASLDAG 294

CP000027_1019: domain 1 of 1, from 246 to 310: score 64.9, E = 1.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++la+++HELRTPLt+I g+++ +l++++ e +
CP000027_1 246 SRQRLLADIAHELRTPLTVIEGTVDGILDGVF----------EAD-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l ti++e+ l rLi dl+d+s +e+g
CP000027_1 281 ----------AQHLTTIKEESATLTRLIKDLRDISLAESG 310

CP000027_1250: domain 1 of 2, from 142 to 207: score 61.7, E = 1.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a+++HE++ PLt+I+g++e L + seeq
CP000027_1 142 SVGALTAGVAHEINSPLTSILGFSERLAR---------KCTSEEQ-- 177

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e+i+ ea r + i++l++++r ++
CP000027_1 178 ----------HRDIERIHTEALRAAKVIDNLRTFARSYQQ 207

CP000027_1482: domain 1 of 1, from 168 to 233: score 50.1, E = 2.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+++l HEL+TPLt++++++elL + +l ee +
CP000027_1 168 QRVTFMRALVHELKTPLTSMLATSELLSK----------NLKEEPN- 203

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y + ++ ++ l+ i++lLd++r e g
CP000027_1 204 ----------QSYMKCLYAGIQDLNLRIDELLDIARGEIG 233

CP000027_0298: domain 1 of 1, from 207 to 271: score 50.1, E = 2.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef +l HEL+TPLt I +++e+L++ +l ++
CP000027_0 207 QRTEFYKALVHELKTPLTPIVLNSEMLED----------NLEGKH-- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + i+ ++ ll+ in+l d+++ e g
CP000027_0 242 ----------KKLADNIKLSSLELLARINELYDMAKGEVG 271

CP000027_0164: domain 1 of 1, from 277 to 342: score 48.6, E = 7.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ef++ l HEL+TPLt I++++++L + l+++
CP000027_0 277 KRAEFTRILVHELKTPLTPIIAASDMLIK----------MLPPDIS- 312

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + i + ae l++ ndl dl r e g
CP000027_0 313 ----------HELASQINKGAEELNNRMNDLFDLVRGELG 342

CP000027_0226: domain 1 of 1, from 362 to 427: score 40.0, E = 2.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ef+++l HEL+TPLt I++++++L l e
CP000027_0 362 NRIEFTRALVHELKTPLTPIMAASDTLSS----------GLKQEP-- 396

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i + a l++ i++lLdl+r e g
CP000027_0 397 ---------WLNLAQNINKGAFNLNKRIDELLDLARGEIG 427

CP000027_0171: domain 1 of 1, from 356 to 422: score 37.3, E = 1.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l +l HE+RTPLt +++++++L + +e++ e
CP000027_0 356 KRQAHLKALVHEIRTPLTPLLAASDALVN--------VSEKGTEL-- 392

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i++ ae l++ i dl +l+r g
CP000027_0 393 ----------YNLASSIREGAETLNNRIHDLIELERGKIG 422

CP000027_0294: domain 1 of 1, from 198 to 259: score 35.5, E = 4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef++ + H+L+TPLt+I+ + +L + + + +
CP000027_0 198 SRLEFTRIVVHDLKTPLTSIISSSGVLSN----------IAADGK-- 232

peLRledpeyreyletilreaerllrLindlLdlsr<-*
y+ + i++++ l+ +++lLd+++
CP000027_0 233 ---------YKALAANIYESTMNLNTRLDELLDMAQ 259

CP000027_0308: domain 1 of 1, from 302 to 367: score 32.4, E = 3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+++l HEL+T Lt +++++e L els+ +
CP000027_0 302 QRNYFMRALVHELKTSLTPLLAASEYLVS----------ELSDSAL- 337

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y + +++ a l++ i+dl+ l++ e g
CP000027_0 338 ----------LGYARNMQNGAINLNNKIDDLMNLAKGEIG 367


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-16 1 0|=
-15 2 0|=
-14 29 0|======
-13 58 1|*===========
-12 112 36|=======*===============
-11 177 187|==================================== *
-10 259 347|==================================================== *
-9 280 358|======================================================== *
-8 255 268|=================================================== *
-7 166 169|=================================*
-6 108 97|===================*==
-5 58 53|==========*=
-4 24 28|=====*
-3 14 15|==*
-2 7 7|=*
-1 7 4|*=
0 3 2|*
1 5 1|*
> 2 15 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 203.0892
P(chi-square) = 3.66e-38

Total sequences searched: 1580

Whole sequence top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: