Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

1 accessions found for Anaplasma marginale str. St. Maries  

Data for CP000030  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000030.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000030_0222 CDS_277480-278886 93.6 8.1e-27 1
CP000030_0339 CDS_452743-450260 46.5 1.8e-13 1
CP000030_0100 CDS_126818-128905 35.2 2.9e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000030_0222 1/1 232 301 .. 1 87 [] 93.6 8.1e-27
CP000030_0339 1/1 437 503 .. 1 87 [] 46.5 1.8e-13
CP000030_0100 1/1 466 537 .. 1 87 [] 35.2 2.9e-10

Alignments of top-scoring domains:
CP000030_0222: domain 1 of 1, from 232 to 301: score 93.6, E = 8.1e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+flan+sHELRTPL++I+g++e+++ e+ ++ ++e+
CP000030_0 232 SKSQFLANVSHELRTPLNSIIGFSEIIQSES------LGPIGSEE-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey++ i++++ +ll+Lind+Ld+s++ea+
CP000030_0 271 ---------YKEYINDIHQSGVHLLSLINDILDFSKAEAN 301

CP000030_0339: domain 1 of 1, from 437 to 503: score 46.5, E = 1.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI+g+++lLl ++++++
CP000030_0 437 AIGQLAGGIAHDFNNILTAIIGFCDLLLI--------QHPATDPS-- 473

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++ a+r +Li +l+ +sr ++
CP000030_0 474 ----------FRDIMQIKQNANRATNLIKQLMAFSRKQTL 503

CP000030_0100: domain 1 of 1, from 466 to 537: score 35.2, E = 2.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a s+ ++ ++HE+++P+t I ++ae L+ ++ ++ s ++
CP000030_0 466 AWSDVARRIAHEIKNPVTPIYLAAERLRSKYA-----EQIVSGRET- 506

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +y++ti + + +++++++++ ++r+ +
CP000030_0 507 ---------FLKYTDTITKHVSSISEIVDEFAKFARMPSA 537


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 1 0|=
-13 17 0|=====
-12 59 21|=====*=========
-11 88 112|====================== *
-10 158 208|======================================== *
-9 189 215|================================================ *
-8 156 161|======================================= *
-7 105 101|=========================*=
-6 73 58|==============*====
-5 46 32|=======*====
-4 24 17|====*=
-3 12 9|==*
-2 9 4|*==
-1 3 2|*
0 2 1|*
1 2 0|=
> 2 5 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 98.6159
P(chi-square) = 2.997e-17

Total sequences searched: 949

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: