Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

2 accessions found for Shigella boydii Sb227  

Data for CP000036  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HWE_HK.hmm [HWE_HK]
Sequence database: CP000036.Gprot.fsa
per-sequence score cutoff: >= 60.0 [TC1]
per-domain score cutoff: >= 60.0 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HWE_HK
Accession: PF07536.4
Description: HWE histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]

Alignments of top-scoring domains:
[no hits above thresholds]

Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-17 1 0|=
-16 2 0|=
-15 0 0|
-14 16 0|==
-13 54 0|====
-12 455 0|===============================
-11 660 33|==*=========================================
-10 861 427|============================*=============================
-9 632 1058|=========================================== *
-8 681 1098|============================================== *
-7 352 738|======================== *
-6 157 402|=========== *
-5 114 199|======== *
-4 74 94|===== *
-3 41 43|==*
-2 20 20|=*
-1 9 9|*
0 2 4|*
1 2 1|*
2 2 0|=
3 1 0|=


% Statistical details of theoretical EVD fit:
mu = -7.9989
lambda = 0.7843
chi-sq statistic = 12764.7422
P(chi-square) = 0

Total sequences searched: 4142

Whole sequence top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K


Acknowledgements:

This research is funded by:

Developed by: