Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Xanthomonas campestris pv. campestris str. 8004  

Data for CP000050  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000050.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000050_2292 CDS_2822803-2820623 95.2 1.3e-26 1
CP000050_1725 CDS_2134054-2129960 91.6 1.3e-25 1
CP000050_1237 CDS_1547786-1551370 89.2 6.3e-25 1
CP000050_1235 CDS_1540118-1543678 87.7 1.7e-24 2
CP000050_1236 CDS_1543760-1547302 86.1 4.8e-24 1
CP000050_0482 CDS_585144-582841 84.0 1.9e-23 1
CP000050_3011 CDS_3658134-3661274 83.4 2.9e-23 1
CP000050_3223 CDS_3918284-3919627 80.7 1.6e-22 1
CP000050_3020 CDS_3673346-3672432 78.8 5.7e-22 1
CP000050_3355 CDS_4056278-4058188 76.0 3.5e-21 1
CP000050_1026 CDS_1266359-1267516 75.6 4.5e-21 1
CP000050_1038 CDS_1280431-1278821 67.9 7.1e-19 1
CP000050_3478 CDS_4191734-4189074 66.3 2e-18 1
CP000050_3660 CDS_4403035-4401143 65.2 4.2e-18 1
CP000050_3927 CDS_4697862-4699295 65.0 4.7e-18 1
CP000050_1934 CDS_2372463-2369023 64.1 8.4e-18 1
CP000050_4111 CDS_4915616-4912173 63.6 1.1e-17 1
CP000050_2115 CDS_2582257-2583528 61.8 3.9e-17 1
CP000050_3401 CDS_4100973-4099702 58.1 4.3e-16 1
CP000050_0190 CDS_245659-246708 57.2 7.7e-16 1
CP000050_3014 CDS_3662676-3663800 53.0 1.2e-14 1
CP000050_0799 CDS_979299-976654 51.3 3.6e-14 1
CP000050_0794 CDS_972733-974118 49.4 1.3e-13 1
CP000050_1395 CDS_1715865-1717298 45.6 1.5e-12 1
CP000050_0712 CDS_873023-874834 45.1 2e-12 1
CP000050_3076 CDS_3733363-3732080 44.6 2.8e-12 1
CP000050_1498 CDS_1836863-1834908 44.1 3.9e-12 1
CP000050_2535 CDS_3115167-3112261 38.2 1.9e-10 1
CP000050_1658 CDS_2024406-2027414 37.4 3.2e-10 1
CP000050_4180 CDS_5013662-5014909 35.9 8.3e-10 1
CP000050_2532 CDS_3110218-3108116 35.7 9.2e-10 1
CP000050_3010 CDS_3658127-3656814 30.1 3.7e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000050_2292 1/1 188 253 .. 1 87 [] 95.2 1.3e-26
CP000050_1725 1/1 643 708 .. 1 87 [] 91.6 1.3e-25
CP000050_1237 1/1 823 888 .. 1 87 [] 89.2 6.3e-25
CP000050_1235 1/2 807 872 .. 1 87 [] 87.4 2.1e-24
CP000050_1236 1/1 807 872 .. 1 87 [] 86.1 4.8e-24
CP000050_0482 1/1 110 175 .. 1 87 [] 84.0 1.9e-23
CP000050_3011 1/1 365 433 .. 1 87 [] 83.4 2.9e-23
CP000050_3223 1/1 214 278 .. 1 87 [] 80.7 1.6e-22
CP000050_3020 1/1 69 137 .. 1 87 [] 78.8 5.7e-22
CP000050_3355 1/1 275 340 .. 1 87 [] 76.0 3.5e-21
CP000050_1026 1/1 176 242 .. 1 87 [] 75.6 4.5e-21
CP000050_1038 1/1 314 380 .. 1 87 [] 67.9 7.1e-19
CP000050_3478 1/1 652 720 .. 1 87 [] 66.3 2e-18
CP000050_3660 1/1 250 316 .. 1 87 [] 65.2 4.2e-18
CP000050_3927 1/1 247 312 .. 1 87 [] 65.0 4.7e-18
CP000050_1934 1/1 761 827 .. 1 87 [] 64.1 8.4e-18
CP000050_4111 1/1 783 849 .. 1 87 [] 63.6 1.1e-17
CP000050_2115 1/1 177 242 .. 1 87 [] 61.8 3.9e-17
CP000050_3401 1/1 213 279 .. 1 87 [] 58.1 4.3e-16
CP000050_0190 1/1 120 187 .. 1 87 [] 57.2 7.7e-16
CP000050_3014 1/1 156 222 .. 1 87 [] 53.0 1.2e-14
CP000050_0799 1/1 516 581 .. 1 87 [] 51.3 3.6e-14
CP000050_0794 1/1 242 307 .. 1 87 [] 49.4 1.3e-13
CP000050_1395 1/1 258 323 .. 1 87 [] 45.6 1.5e-12
CP000050_0712 1/1 368 436 .. 1 87 [] 45.1 2e-12
CP000050_3076 1/1 212 278 .. 1 87 [] 44.6 2.8e-12
CP000050_1498 1/1 433 499 .. 1 87 [] 44.1 3.9e-12
CP000050_2535 1/1 589 657 .. 1 87 [] 38.2 1.9e-10
CP000050_1658 1/1 631 699 .. 1 87 [] 37.4 3.2e-10
CP000050_4180 1/1 182 247 .. 1 87 [] 35.9 8.3e-10
CP000050_2532 1/1 326 394 .. 1 87 [] 35.7 9.2e-10
CP000050_3010 1/1 205 271 .. 1 87 [] 30.1 3.7e-08

Alignments of top-scoring domains:
CP000050_2292: domain 1 of 1, from 188 to 253: score 95.2, E = 1.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTPL++++g++e+L + t l++eq
CP000050_2 188 AKSRFLANMSHEFRTPLNGLSGMTEVLAT---------TRLDAEQ-- 223

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ti+ +a++ll+L++++Ld+s ieag
CP000050_2 224 ----------KECLNTIQASARSLLSLVEEVLDISAIEAG 253

CP000050_1725: domain 1 of 1, from 643 to 708: score 91.6, E = 1.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+flan+sHE+RTP++aI+g++ lL++ +el+
CP000050_1 643 SKSDFLANMSHEIRTPMNAILGMLYLLQR---------SELPGAA-- 678

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +i+r+a++ll++ind+Ld+s+ieag
CP000050_1 679 ----------QDMVTKIDRSARSLLEIINDILDFSKIEAG 708

CP000050_1237: domain 1 of 1, from 823 to 888: score 89.2, E = 6.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla+l HE RTP+t+++g++elLl+ t l+ +q
CP000050_1 823 AKTRFLATLGHEVRTPMTGVLGMSELLLK---------TQLDHKQ-- 858

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+e+i+r++ +llrL+nd Ldl+rie+g
CP000050_1 859 ----------RSYTESIRRAGSHLLRLVNDALDLARIESG 888

CP000050_1235: domain 1 of 2, from 807 to 872: score 87.4, E = 2.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla+l HE RTP+t+++g++elLl t+l+ q
CP000050_1 807 AKTRFLATLGHEVRTPMTGVLGMSELLLQ---------TPLDGRQ-- 842

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y + i++++++llrL+nd Ldl+rieag
CP000050_1 843 ----------QGYASAIQSAGKHLLRLVNDALDLARIEAG 872

CP000050_1236: domain 1 of 1, from 807 to 872: score 86.1, E = 4.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla+l HE RTP+t+++g++elLl+ t+l+++q
CP000050_1 807 AKSNFLATLGHEVRTPMTGVLGMSELLLA---------TPLDAKQ-- 842

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ i++++ +llrL+nd Ldl+rieag
CP000050_1 843 ----------RGHVDAIRKAGAHLLRLVNDALDLARIEAG 872

CP000050_0482: domain 1 of 1, from 110 to 175: score 84.0, E = 1.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efla++sHE+RTPL++I+ ++el+ + + ls +q
CP000050_0 110 AKGEFLATMSHEIRTPLNGIIPMLELISR---------GQLSLDQ-- 145

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+t+ ++ +llr+++d+Ld+s++ea+
CP000050_0 146 ----------RDMLQTATGSSLQLLRIVDDILDYSKLEAN 175

CP000050_3011: domain 1 of 1, from 365 to 433: score 83.4, E = 2.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++ + +a+lL + +d++l++eq
CP000050_3 365 YKSEFLANMSHELRTPLNSSLILAKLLAD------NKDHTLTAEQ-- 403

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y + i+++ + ll+Lind+Ldls+ieag
CP000050_3 404 ----------VKYAQAIHSSNNDLLALINDILDLSKIEAG 433

CP000050_3223: domain 1 of 1, from 214 to 278: score 80.7, E = 1.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPLt++ gy+++L ++ ++
CP000050_3 214 VRRDFVANVSHELRTPLTVVHGYLDMLDP---------EDFPDSG-- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l ++++++r+ +L++dlL+lsr+e++
CP000050_3 250 -----------PMLAEMRKQSQRMAQLVEDLLTLSRLESQ 278

CP000050_3020: domain 1 of 1, from 69 to 137: score 78.8, E = 5.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fl+++sHE+RTPL +I+ + lL++++d ++l++eq
CP000050_3 69 LKSRFLSYMSHEFRTPLGSILSITRLLEDGMD------GPLNAEQ-- 107

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ + +++ l+++++dlLdl++ieag
CP000050_3 108 ----------LKQVRFVSASTRELSEMVDDLLDLAKIEAG 137

CP000050_3355: domain 1 of 1, from 275 to 340: score 76.0, E = 3.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efl+ sHELRTPL+aI+gya++L++ +l+e+ +
CP000050_3 275 AKTEFLSRSSHELRTPLNAILGYAQVLEM----------DLPEPGH- 310

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ il ++++ll Li +lLd++riea
CP000050_3 311 ----------RRHLQHILGAGRHLLGLITELLDIARIEAD 340

CP000050_1026: domain 1 of 1, from 176 to 242: score 75.6, E = 4.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef a++sHELRTPL++Irg++elLl+ ++l+e+
CP000050_1 176 RDREFNADVSHELRTPLAVIRGATELLLT--------KPNLDEKV-- 212

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i+r+ +++++Li lL lsr e g
CP000050_1 213 ----------LQRLQRIQRAEQQCSDLIGSLLLLSRNERG 242

CP000050_1038: domain 1 of 1, from 314 to 380: score 67.9, E = 7.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f a+l+HE+R+PL+aI +++lL+e +++ ++ +
CP000050_1 314 AMGRFSASLAHEIRNPLAAINYASQLLEE--------SPDIGDAD-- 350

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l++i+++ +r + +++ +L l+r e
CP000050_1 351 ----------RRLLQIIHQQCQRTNGIVESVLGLARRERA 380

CP000050_3478: domain 1 of 1, from 652 to 720: score 66.3, E = 2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l+++sH+LR PL++++g a+ L e++ +++++ +r
CP000050_3 652 LRSALLSSVSHDLRSPLASMIGSASSLAEYG-------EAMDATDR- 690

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +leti+ e+erl+r i++lLd++r+++
CP000050_3 691 ----------RSLLETIQLEGERLDRYIQNLLDMTRLGHT 720

CP000050_3660: domain 1 of 1, from 250 to 316: score 65.2, E = 4.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+lsHELRTPLt+I+g +elLl +++ +++ + +
CP000050_3 250 LKDEFLATLSHELRTPLTTILGWSELLLQRVE-----EGHPNYKG-- 289

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i ++a+ rLi+d+Ldls + g
CP000050_3 290 -------------LSVIASSARAQKRLISDMLDLSSMLLG 316

CP000050_3927: domain 1 of 1, from 247 to 312: score 65.0, E = 4.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a+++HELRTPL+a+ +yae++l+ t+l +++
CP000050_3 247 AERDFVADAAHELRTPLSALHAYAEVALR--------ATTLESKD-- 283

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+++l+ a+r +rL ++lLdl+r++ag
CP000050_3 284 -----------AALQRLLETARRSNRLAEQLLDLARLDAG 312

CP000050_1934: domain 1 of 1, from 761 to 827: score 64.1, E = 8.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+lsHELRTPL+aI+g + l+++ ++ + ++
CP000050_1 761 VKDEFLATLSHELRTPLNAILGWSRLMQA---------DAFEPAKL- 797

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l +i+r+a+ ++i+dlLd+s i +g
CP000050_1 798 ----------GKGLVVIERSARAQTQIIDDLLDMSAILSG 827

CP000050_4111: domain 1 of 1, from 783 to 849: score 63.6, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+ +PL+a r++a++L+e ++++ e++
CP000050_4 783 SKTRFLAAISHDVLQPLNAARLFASALRE---------SHQNNEEQ- 819

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + e+++ +++ ++L++ lLd sr++ag
CP000050_4 820 ----------RHLAERVDASLRAAEELLDGLLDVSRLDAG 849

CP000050_2115: domain 1 of 1, from 177 to 242: score 61.8, E = 3.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a l H+LR PL +I++++e+L+ +++s+
CP000050_2 177 LRDQFIAVLGHDLRSPLQSISMATEMLQL---------EPQSPRG-- 212

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l i+ ++ r+ L++d+Ld++r + g
CP000050_2 213 ----------ASLLGHIRTSLTRIGGLVDDVLDFARGRLG 242

CP000050_3401: domain 1 of 1, from 213 to 279: score 58.1, E = 4.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f++++sHELRTPLt+Ir +++++l+ d+el + +
CP000050_3 213 RERNFTRDASHELRTPLTVIRVASDMALA--------DEELAPRT-- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i+r+++ +++ i+ +L l+r +
CP000050_3 250 ----------QRSLRRIQRAGRDMEAVIDAFLILAREAEI 279

CP000050_0190: domain 1 of 1, from 120 to 187: score 57.2, E = 7.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s l +l+HELR+PL++++g+a+lL +++ + ++e++
CP000050_0 120 ALSAALKGLAHELRNPLAGLKGAAQLLARRA-------AGRDEDE-- 157

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++e i e+erl+ L+++lL s ++
CP000050_0 158 ----------RELIELIGTEIERLNTLLERLLSPSPLRPH 187

CP000050_3014: domain 1 of 1, from 156 to 222: score 53.0, E = 1.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a l H+LRTPL++I++ a+ L + + +
CP000050_3 156 LNETMMAVLTHDLRTPLSVILLCADKLGL---------DVPEDGSA- 192

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le ++++a+r+ r++++lLd+sr+++
CP000050_3 193 ----------ARTLEHLENSARRMARMVEQLLDFSRLRTD 222

CP000050_0799: domain 1 of 1, from 516 to 581: score 51.3, E = 3.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a++ H+L +PL+a r+++++L+ +
CP000050_0 516 YKTRFVASAVHDLLQPLNAARMFVSVLRG---------QVHATGS-- 551

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ i+ ++ ++++n lLd+sr+eag
CP000050_0 552 ----------AQLVDNIDGALAAQDAILNSLLDISRLEAG 581

CP000050_0794: domain 1 of 1, from 242 to 307: score 49.4, E = 1.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a ++H++RTPL+a+r+ a+l+ + + ++ ++
CP000050_0 242 TLRAFMAEAAHQMRTPLAALRAQAQLAMD----------DDDPRDM- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l i+r a +++rL+n+lL + +
CP000050_0 278 ----------QRSLVAIERNASHMSRLLNQLLSDASVIHR 307

CP000050_1395: domain 1 of 1, from 258 to 323: score 45.6, E = 1.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +l HE++ PL+aIrg++elL e +l+e +r
CP000050_1 258 YVEHYVQSLTHEMKSPLAAIRGASELLTE----------PLPECDR- 293

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ +i+ + +rl + i+ lL l+ e+
CP000050_1 294 ----------QHFVASIRAQEQRLTETIDKLLALAEVEQH 323

CP000050_0712: domain 1 of 1, from 368 to 436: score 45.1, E = 2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL + g+++ L + + +++ +e+
CP000050_0 368 ELEAFSYSVSHDLRAPLRHVAGFSDKLAR-------HLGDAADEKS- 406

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y e+i ++a+r+ +Li+dlL +sr++
CP000050_0 407 ----------RHYMEVISSSARRMASLIDDLLVYSRLGRS 436

CP000050_3076: domain 1 of 1, from 212 to 278: score 44.6, E = 2.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ ++sHELRTP+++I +ael+le ++ ++ +
CP000050_3 212 RERAFIDSASHELRTPIAVIGNAAELALE---------QPDTPAVV- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l++i + + ++Li lL l++
CP000050_3 249 ----------RHQLQRIAQTSGAVEQLITLLLVLAKDPGR 278

CP000050_1498: domain 1 of 1, from 433 to 499: score 44.1, E = 3.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++a+++HE R+PL +I+ +++++++ t +
CP000050_1 433 AVGALMAGVAHEVRNPLFGISSTLDAMEA---------TFNTGRSG- 469

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+++re++rl++L dlL++ r ++
CP000050_1 470 ----------GRHQEVLRREVRRLNKLMTDLLEYGRPPTE 499

CP000050_2535: domain 1 of 1, from 589 to 657: score 38.2, E = 1.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ LtaI+ +elL++ + +++ +rl
CP000050_2 589 AVGQLTGGLAHDFNNLLTAISVGLELLQT--------RIAQGRYDRL 627

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+e ++++a r +L ++lL +sr ++
CP000050_2 628 ----------ERYVEMAQSSAARAAALTQRLLAFSRRQTL 657

CP000050_1658: domain 1 of 1, from 631 to 699: score 37.4, E = 3.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ Lt+I+g +el+++++ g + ++ +
CP000050_1 631 AVGQLTGGLAHDFNNLLTGISGSLELMQTRM-----GQGRFDDVE-- 670

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +++++a r +L +lL +sr ++
CP000050_1 671 -----------CYIAVAQKAAGRAAALTHRLLAFSRRQTL 699

CP000050_4180: domain 1 of 1, from 182 to 247: score 35.9, E = 8.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+ l H+LR+PL ++ + +++L + ls q
CP000050_4 182 LREEFIGILGHDLRNPLQSMHAVVDMLSI---------DQLSQRQ-- 217

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++r+++r+++Li+ d++r +
CP000050_4 218 ----------GGAIRSLQRSLRRMEELIDFASDFARGIER 247

CP000050_2532: domain 1 of 1, from 326 to 394: score 35.7, E = 9.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+ +++l++ + d + +se
CP000050_2 326 AVGQLTGGIAHDFNNMLTGILSALDLARLRID------QGRSEGL-- 364

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+++ +a r +L ++lL +sr ++
CP000050_2 365 ----------GRFLDVASASALRAAALTQRLLAFSRRQSL 394

CP000050_3010: domain 1 of 1, from 205 to 271: score 30.1, E = 3.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +l+H++++ Lt++ + ++l+ ++ ++ +
CP000050_3 205 ALGRLTLGLAHDFNNLLTVMVTSLDLIAL--------RAGEDART-- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++e ++ +++r L ++lL ++r +
CP000050_3 242 ----------RMLVEAAQTAVDRGTLLTRQLLAFARGQRL 271


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-14 11 0|=
-13 53 3|*===
-12 174 97|======*======
-11 356 506|========================== *
-10 685 939|================================================= *
-9 823 970|==========================================================*
-8 720 726|===================================================*
-7 558 457|================================*=======
-6 378 263|==================*========
-5 193 144|==========*===
-4 134 77|=====*====
-3 77 40|==*===
-2 23 21|=*
-1 23 11|*=
0 9 5|*
1 6 3|*
2 6 1|*
3 0 0|
4 0 0|
5 1 0|=
> 6 43 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 371.3980
P(chi-square) = 0

Total sequences searched: 4273

Whole sequence top hits:
tophits_s report:
Total hits: 32
Satisfying E cutoff: 32
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 32
Satisfying E cutoff: 32
Total memory: 33K


Acknowledgements:

This research is funded by:

Developed by: