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Classification of phyla is from NCBI page
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132 projects found  

3 accessions found for Rickettsia felis URRWXCal2  

Data for CP000053  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000053.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000053_0990 CDS_1052022-1053515 86.0 1.8e-24 1
CP000053_0815 CDS_864322-865296 79.5 1.2e-22 1
CP000053_0657 CDS_706304-704991 59.3 6.3e-17 1
CP000053_0427 CDS_453241-455040 52.6 5e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000053_0990 1/1 268 333 .. 1 87 [] 86.0 1.8e-24
CP000053_0815 1/1 102 170 .. 1 87 [] 79.5 1.2e-22
CP000053_0657 1/1 230 288 .. 1 87 [] 59.3 6.3e-17
CP000053_0427 1/1 371 441 .. 1 87 [] 52.6 5e-15

Alignments of top-scoring domains:
CP000053_0990: domain 1 of 1, from 268 to 333: score 86.0, E = 1.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+an+sHELRTPL+aI+g++e+L e+++e++
CP000053_0 268 SNTKFFANISHELRTPLNAIIGFSEILMS----------ERDAEKN- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y++ i +++++ll++ind+Ldls++ a
CP000053_0 304 ----------KNYIKDINDAGKHLLSMINDILDLSKASAD 333

CP000053_0815: domain 1 of 1, from 102 to 170: score 79.5, E = 1.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k efl+n+ HE++TPLt+I+ ++e+L +++ ++ +e+qr
CP000053_0 102 LKHEFLRNINHEINTPLTGIISLSETLWANY-------DKFNEDQR- 140

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++e+i +++ rl++Lin++Ld+s++ +
CP000053_0 141 ----------RSAVEIIAKSSIRLNSLINNILDFSKLSSL 170

CP000053_0657: domain 1 of 1, from 230 to 288: score 59.3, E = 6.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPLt +++ +el++ +e+
CP000053_0 230 KRTTMLAMISHDLRTPLTRMKLQLELMEG-------------SEE-- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++++ ++++in Ld+++ e+
CP000053_0 262 -------------IKGLKQDILTMQQMINSYLDFAKGEST 288

CP000053_0427: domain 1 of 1, from 371 to 441: score 52.6, E = 5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a s+ + ++HE+++PLt I++++e Ll+++ ++e e++
CP000053_0 371 AWSDVAKKVAHEIKNPLTPILLASERLLKKF------SPEIKEKE-- 409

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ yl+ i+r ++ + ++++++ ++r+ a+
CP000053_0 410 --------EFENYLKMIIRHTNDIKNIVSEFVLFARLPAP 441


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-14 7 0|==
-13 26 1|*=====
-12 92 31|======*============
-11 185 165|================================*====
-10 252 307|=================================================== *
-9 278 317|======================================================== *
-8 192 238|======================================= *
-7 156 150|=============================*==
-6 82 86|=================*
-5 53 47|=========*=
-4 31 25|====*==
-3 16 13|==*=
-2 16 7|=*==
-1 3 3|*
0 3 1|*
1 2 0|=
2 1 0|=
3 0 0|
4 0 0|
> 5 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 153.1257
P(chi-square) = 8.473e-28

Total sequences searched: 1400

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: