Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Haemophilus influenzae 86-028NP  

Data for CP000057  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000057.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000057_0323 CDS_362042-363745 68.8 2.5e-20 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000057_0323 1/1 364 436 .. 1 70 [] 68.8 2.5e-20

Alignments of top-scoring domains:
CP000057_0323: domain 1 of 1, from 364 to 436: score 68.8, E = 2.5e-20
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe....earea
ER IARELHDs++Q Ls + +ql l+++ l +k++e+++++ +
CP000057_0 364 ERSIIARELHDSLAQVLSFLQIQLTLLKHNL--KKEDEqskeKSLAI 408

ldeirelarealaevRrllgdLR.paal<-*
+++ +++++ ++a++R+ll ++R + ++
CP000057_0 409 IANFEQALSGGYAQLRELLATFRlTIQE 436


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 19 0|===
-13 41 0|======
-12 90 20|==*==========
-11 164 164|=======================*
-10 362 380|==================================================== *
-9 343 432|================================================= *
-8 252 333|==================================== *
-7 186 209|=========================== *
-6 131 118|================*==
-5 85 63|========*====
-4 55 33|====*===
-3 21 17|==*
-2 18 8|=*=
-1 16 4|*==
0 3 2|*
1 2 1|*
2 0 0|
3 1 0|=
> 4 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 320.4073
P(chi-square) = 0

Total sequences searched: 1792

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: