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Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

3 accessions found for Pseudomonas syringae pv. phaseolicola 1448A  

Data for CP000058  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000058.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000058_1122 CDS_1372556-1370826 105.3 2e-29 2
CP000058_3548 CDS_4266616-4269369 101.9 1.9e-28 1
CP000058_4254 CDS_5084418-5087207 91.0 2.3e-25 1
CP000058_1820 CDS_2212233-2209897 86.4 4.8e-24 1
CP000058_3458 CDS_4171410-4173758 85.3 9.8e-24 1
CP000058_4879 CDS_5800189-5801511 83.3 3.4e-23 1
CP000058_0743 CDS_901688-903976 78.7 7.3e-22 1
CP000058_2482 CDS_2996888-3000400 73.2 2.6e-20 1
CP000058_3289 CDS_3982536-3980299 72.2 5e-20 1
CP000058_1422 CDS_1719147-1720331 71.1 1e-19 1
CP000058_1929 CDS_2372973-2375636 71.1 1e-19 1
CP000058_0244 CDS_292304-294091 67.7 9.1e-19 1
CP000058_3141 CDS_3818586-3819974 66.7 1.8e-18 1
CP000058_1148 CDS_1403500-1402136 66.2 2.5e-18 1
CP000058_4632 CDS_5512815-5513900 65.2 4.7e-18 1
CP000058_0715 CDS_864626-863034 65.2 4.7e-18 1
CP000058_3784 CDS_4524614-4523232 65.1 5.2e-18 1
CP000058_4184 CDS_5005788-5003794 64.9 5.7e-18 1
CP000058_3565 CDS_4284450-4282840 62.9 2.1e-17 1
CP000058_1403 CDS_1703616-1704839 62.5 2.8e-17 1
CP000058_3231 CDS_3915211-3913997 61.7 4.6e-17 1
CP000058_1421 CDS_1717855-1719030 61.3 6.1e-17 1
CP000058_1792 CDS_2175453-2176451 60.8 8.7e-17 1
CP000058_4284 CDS_5116990-5118120 60.5 9.9e-17 1
CP000058_2265 CDS_2756743-2755352 59.6 1.9e-16 1
CP000058_3887 CDS_4657589-4656300 59.1 2.5e-16 1
CP000058_4047 CDS_4839176-4840744 58.8 3.1e-16 1
CP000058_4610 CDS_5481100-5479709 58.5 3.8e-16 1
CP000058_0765 CDS_941714-943330 57.8 5.9e-16 1
CP000058_3385 CDS_4084905-4086179 56.6 1.3e-15 1
CP000058_1505 CDS_1823010-1819537 53.4 1e-14 1
CP000058_3297 CDS_3989133-3990506 52.8 1.5e-14 1
CP000058_3821 CDS_4570996-4573371 51.2 4.5e-14 1
CP000058_1210 CDS_1467437-1469956 49.8 1.1e-13 1
CP000058_0826 CDS_1029582-1026634 49.6 1.3e-13 1
CP000058_2848 CDS_3460646-3461602 48.9 2e-13 1
CP000058_0238 CDS_287132-288454 48.3 2.9e-13 1
CP000058_2485 CDS_3001876-3003057 46.9 7.4e-13 1
CP000058_0141 CDS_174771-172954 43.7 5.7e-12 1
CP000058_4936 CDS_5867706-5866672 42.8 1e-11 1
CP000058_3123 CDS_3798890-3796797 42.5 1.3e-11 1
CP000058_2487 CDS_3005607-3003649 40.6 4.6e-11 1
CP000058_3314 CDS_4013029-4015101 38.6 1.7e-10 1
CP000058_1653 CDS_2006339-2003469 37.9 2.5e-10 2
CP000058_2158 CDS_2623839-2625137 37.0 4.7e-10 1
CP000058_3904 CDS_4677227-4679263 36.7 5.7e-10 1
CP000058_3730 CDS_4464954-4466885 34.8 1.9e-09 1
CP000058_0904 CDS_1121272-1123356 34.0 3.3e-09 1
CP000058_1134 CDS_1385722-1387182 32.6 8.4e-09 1
CP000058_2367 CDS_2866985-2868508 32.3 9.8e-09 1
CP000058_1315 CDS_1593316-1591229 31.7 1.5e-08 1
CP000058_4219 CDS_5043242-5040474 31.5 1.7e-08 2
CP000058_4061 CDS_4857450-4856206 31.5 1.7e-08 1
CP000058_1912 CDS_2352539-2351514 30.7 2.9e-08 1
CP000058_2085 CDS_2540776-2539472 30.1 4.3e-08 1
CP000058_3819 CDS_4567673-4569430 28.8 1e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000058_3548 1/1 284 349 .. 1 87 [] 101.9 1.9e-28
CP000058_1122 2/2 315 383 .. 1 87 [] 97.4 3.5e-27
CP000058_4254 1/1 396 461 .. 1 87 [] 91.0 2.3e-25
CP000058_1820 1/1 404 468 .. 1 87 [] 86.4 4.8e-24
CP000058_3458 1/1 291 356 .. 1 87 [] 85.3 9.8e-24
CP000058_4879 1/1 205 272 .. 1 87 [] 83.3 3.4e-23
CP000058_0743 1/1 180 245 .. 1 87 [] 78.7 7.3e-22
CP000058_2482 1/1 493 561 .. 1 87 [] 73.2 2.6e-20
CP000058_3289 1/1 520 591 .. 1 87 [] 72.2 5e-20
CP000058_1422 1/1 173 238 .. 1 87 [] 71.1 1e-19
CP000058_1929 1/1 653 721 .. 1 87 [] 71.1 1e-19
CP000058_0244 1/1 375 443 .. 1 87 [] 67.7 9.1e-19
CP000058_3141 1/1 242 308 .. 1 87 [] 66.7 1.8e-18
CP000058_1148 1/1 236 302 .. 1 87 [] 66.2 2.5e-18
CP000058_4632 1/1 132 197 .. 1 87 [] 65.2 4.7e-18
CP000058_0715 1/1 309 375 .. 1 87 [] 65.2 4.7e-18
CP000058_3784 1/1 243 308 .. 1 87 [] 65.1 5.2e-18
CP000058_4184 1/1 418 483 .. 1 87 [] 64.9 5.7e-18
CP000058_3565 1/1 308 373 .. 1 87 [] 62.9 2.1e-17
CP000058_1403 1/1 194 256 .. 1 87 [] 62.5 2.8e-17
CP000058_3231 1/1 184 250 .. 1 87 [] 61.7 4.6e-17
CP000058_1421 1/1 170 235 .. 1 87 [] 61.3 6.1e-17
CP000058_1792 1/1 106 172 .. 1 87 [] 60.8 8.7e-17
CP000058_4284 1/1 152 218 .. 1 87 [] 60.5 9.9e-17
CP000058_2265 1/1 239 303 .. 1 87 [] 59.6 1.9e-16
CP000058_3887 1/1 211 277 .. 1 87 [] 59.1 2.5e-16
CP000058_4047 1/1 164 229 .. 1 87 [] 58.8 3.1e-16
CP000058_4610 1/1 242 308 .. 1 87 [] 58.5 3.8e-16
CP000058_0765 1/1 180 245 .. 1 87 [] 57.8 5.9e-16
CP000058_3385 1/1 204 268 .. 1 87 [] 56.6 1.3e-15
CP000058_1505 1/1 796 863 .. 1 87 [] 53.4 1e-14
CP000058_3297 1/1 238 303 .. 1 87 [] 52.8 1.5e-14
CP000058_3821 1/1 421 487 .. 1 87 [] 51.2 4.5e-14
CP000058_1210 1/1 466 532 .. 1 87 [] 49.8 1.1e-13
CP000058_0826 1/1 754 820 .. 1 87 [] 49.6 1.3e-13
CP000058_2848 1/1 99 163 .. 1 87 [] 48.9 2e-13
CP000058_0238 1/1 225 283 .. 1 87 [] 48.3 2.9e-13
CP000058_2485 1/1 168 241 .. 1 87 [] 46.9 7.4e-13
CP000058_0141 1/1 371 439 .. 1 87 [] 43.7 5.7e-12
CP000058_4936 1/1 118 188 .. 1 87 [] 42.8 1e-11
CP000058_3123 1/1 323 391 .. 1 87 [] 42.5 1.3e-11
CP000058_2487 1/1 281 349 .. 1 87 [] 40.6 4.6e-11
CP000058_3314 1/1 311 379 .. 1 87 [] 38.6 1.7e-10
CP000058_2158 1/1 201 269 .. 1 87 [] 37.0 4.7e-10
CP000058_1653 2/2 584 652 .. 1 87 [] 36.9 5.2e-10
CP000058_3904 1/1 412 502 .. 1 87 [] 36.7 5.7e-10
CP000058_3730 1/1 409 477 .. 1 87 [] 34.8 1.9e-09
CP000058_0904 1/1 326 394 .. 1 87 [] 34.0 3.3e-09
CP000058_1134 1/1 280 308 .. 1 29 [. 32.6 8.4e-09
CP000058_2367 1/1 127 197 .. 1 87 [] 32.3 9.8e-09
CP000058_1315 1/1 321 389 .. 1 87 [] 31.7 1.5e-08
CP000058_4061 1/1 203 268 .. 1 87 [] 31.5 1.7e-08
CP000058_4219 2/2 693 763 .. 1 87 [] 31.3 2e-08
CP000058_1912 1/1 137 189 .. 1 81 [. 30.7 2.9e-08
CP000058_2085 1/1 203 269 .. 1 87 [] 30.1 4.3e-08
CP000058_3819 1/1 363 431 .. 1 87 [] 28.8 1e-07

Alignments of top-scoring domains:
CP000058_3548: domain 1 of 1, from 284 to 349: score 101.9, E = 1.9e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTPL++I+g+++lL++ +el++ q
CP000058_3 284 IKSEFLANMSHEIRTPLNGILGFTHLLQK---------SELTPRQ-- 319

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl ti+++a+ ll++in++Ld+s+ieag
CP000058_3 320 ----------FDYLGTIEKSADNLLSIINEILDFSKIEAG 349

CP000058_1122: domain 2 of 2, from 315 to 383: score 97.4, E = 3.5e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksefla++sHELRTPL+a++g++e+L++++ +++++ q
CP000058_1 315 MKSEFLATMSHELRTPLNAVIGFSEALKDGM------VGDMTDAQ-- 353

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+ i +++++ll+Lind+Ldls+ eag
CP000058_1 354 ----------RRYIGDIFNSGQHLLSLINDILDLSKVEAG 383

CP000058_4254: domain 1 of 1, from 396 to 461: score 91.0, E = 2.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak efla +sHE+RTP+++++g++elLl t+ls +q
CP000058_4 396 AKAEFLAKISHEIRTPMNGVLGMTELLLG---------TPLSVKQ-- 431

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ti+++++ ll Lin++Ld++++e+g
CP000058_4 432 ----------RDYVQTIHSAGNELLTLINEILDITKLESG 461

CP000058_1820: domain 1 of 1, from 404 to 468: score 86.4, E = 4.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefl+ +sHELRTPL++I+g+a+lL + + ++ q
CP000058_1 404 AKSEFLSRMSHELRTPLNSILGFAQLLDM----------DSPASQ-- 438

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + ilr++++ll+Lin++Ld++rieag
CP000058_1 439 ----------RPQIGHILRAGQHLLKLINEVLDIARIEAG 468

CP000058_3458: domain 1 of 1, from 291 to 356: score 85.3, E = 9.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s fla++sHE+RTPL++++g++ l l+ ++ls+eq
CP000058_3 291 ARSAFLAHMSHEIRTPLNGLLGMLALSLD---------SPLSAEQ-- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l +++++++ l +L+nd+Ld+s+ +ag
CP000058_3 327 ----------RQQLMIAHDSGKVLVELLNDILDMSKFDAG 356

CP000058_4879: domain 1 of 1, from 205 to 272: score 83.3, E = 3.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPLt+I gy+e+Ll+++ +e ++
CP000058_4 205 MRKDFVANVSHELRTPLTVIFGYLETLLDNV-------DEVNPRW-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ +++++ r++ L+ndlL l+++ea
CP000058_4 243 ----------VRALQQMHQQGGRMQTLLNDLLLLAKLEAT 272

CP000058_0743: domain 1 of 1, from 180 to 245: score 78.7, E = 7.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTP+++I+g++elL +s++q
CP000058_0 180 AKSQFLATMSHEIRTPMNGILGLLELLHS---------KSMSPDQ-- 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i+++a++l +nd+Ldls+ie +
CP000058_0 216 ----------QQIMLMIDESAKSLMTVLNDVLDLSKIEFN 245

CP000058_2482: domain 1 of 1, from 493 to 561: score 73.2, E = 2.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++ + +a+lL e ++l++eq
CP000058_2 493 YKSEFLANMSHELRTPLNSSLILAKLLAE------NPGENLTAEQ-- 531

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e+i+++++ ll+Lind+Ld+s+ eag
CP000058_2 532 ----------VKFAESIYSAGNDLLNLINDILDISKVEAG 561

CP000058_3289: domain 1 of 1, from 520 to 591: score 72.2, E = 5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a +sH+LR+P+t+I++++ ++++ + +d++ ++ +
CP000058_3 520 ARDELVAVVSHDLRNPMTVISMLCGMMQKSF----SSDGPHTSRRI- 561

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++t++++a r++ L++dlLd s+ieag
CP000058_3 562 ----------STAIDTMQQAASRMNVLLEDLLDTSKIEAG 591

CP000058_1422: domain 1 of 1, from 173 to 238: score 71.1, E = 1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a l H+LR+PL aI + aelLl+ +l+e+
CP000058_1 173 LREQFIAVLGHDLRNPLFAINASAELLLR---------RPLDEKA-- 208

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ il +++r ++L++d+Ld++r + g
CP000058_1 209 ----------LQVVQHILTSGKRASQLVDDVLDFARGRMG 238

CP000058_1929: domain 1 of 1, from 653 to 721: score 71.1, E = 1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +la++sH+LRTPLt++rg ++ Ll+ + ++ + e+r
CP000058_1 653 LRSALLASVSHDLRTPLTSMRGSIDSLLALG-------EAIPLEDR- 691

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+le ++eaerl+r i++lLd++r+++g
CP000058_1 692 ----------RELLEGTRDEAERLDRYIQNLLDMTRLGHG 721

CP000058_0244: domain 1 of 1, from 375 to 443: score 67.7, E = 9.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+sef+ +sHELRTP+t++ ++ lL+e + + +e+r
CP000058_0 375 VRSEFVLRASHELRTPVTGMHMAFGLLQE--------RLHFAPETRE 413

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t+ +e +rl +LindlL +sr ++g
CP000058_0 414 ----------ADLLNTVTEEMQRLMQLINDLLNFSRYQNG 443

CP000058_3141: domain 1 of 1, from 242 to 308: score 66.7, E = 1.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f a+l+HE+RTP+ +++g+++++l+ +++s+++
CP000058_3 242 RLMQFSADLAHEIRTPVGSLMGHCQVALR---------QNRSADE-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +l + l+e+er++rL++ +L l+r+++
CP000058_3 278 ---------YQVLLASNLEELERISRLVESILFLARADEA 308

CP000058_1148: domain 1 of 1, from 236 to 302: score 66.2, E = 2.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELR PLt ++g ++++l+ +s+e+
CP000058_1 236 RLESFNADVAHELRSPLTNLIGQTQVALT---------RGRSAEH-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e l++ l+e+erl+++ind+L l+ +++g
CP000058_1 272 ---------YFEVLQSNLEELERLRSIINDMLFLASADQG 302

CP000058_4632: domain 1 of 1, from 132 to 197: score 65.2, E = 4.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+HE+++PL +Irg+a+lL + el+ee +
CP000058_4 132 TTKMLVRGLAHEIKNPLGGIRGAAQLLAR----------ELPEESL- 167

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+++i++ea+rl++L++++L ++ +
CP000058_4 168 ----------KDYTNVIIEEADRLRNLVDRMLGSNKLPSL 197

CP000058_0715: domain 1 of 1, from 309 to 375: score 65.2, E = 4.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+++HE+R+PL a++ +a+lL e ++els+ +
CP000058_0 309 ALGRLTAGIAHEIRNPLGAVSHAAQLLNE--------SEELSAAD-- 345

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ ++i++++ r++r i+++L+lsr ++
CP000058_0 346 ----------RRLGQIIHDQSGRIDRVIENVLQLSRRREA 375

CP000058_3784: domain 1 of 1, from 243 to 308: score 65.1, E = 5.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+a+++HELRTPL+a+++ +el l+ e+++++
CP000058_3 243 RQAQFIADAAHELRTPLAALKARVELGLR----------ERDPQH-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r le++ ++rl +L n+lL l+rie+g
CP000058_3 278 ---------WRSTLESAALGTDRLTHLANQLLSLARIENG 308

CP000058_4184: domain 1 of 1, from 418 to 483: score 64.9, E = 5.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+l HELRTP+++++g +e++++ ++++e
CP000058_4 418 LKDEFLATLTHELRTPMNGVIGSLEVMQT---------LDMDDEL-- 453

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y +t+ ++a+ + ++in +L+l+ ++ag
CP000058_4 454 ----------EMYQQTAASSARDMMSMINGILTLTELQAG 483

CP000058_3565: domain 1 of 1, from 308 to 373: score 62.9, E = 2.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e+++++sHELRTP++ +r+ +e+ + + ++e r
CP000058_3 308 IQRELVRAVSHELRTPVARLRFGLEMVSD----------ATTPEAR- 343

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y + ++++++ l++L++++L+++r+e+g
CP000058_3 344 ----------RKYMRGMDSDIQDLDKLVDEMLTYARLEQG 373

CP000058_1403: domain 1 of 1, from 194 to 256: score 62.5, E = 2.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l ++sHELR PLt +++++ lL+ ++++
CP000058_1 194 SQQQLLHDISHELRSPLTRMSAAIGLLRQ-------------APTQ- 226

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++le+i+re+er+++Li++lL+l+r+++
CP000058_1 227 ----------LDMLERIERESERMDALIEELLTLARMQSD 256

CP000058_3231: domain 1 of 1, from 184 to 250: score 61.7, E = 4.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+H++RTPL+a + ya+ L e +el+ e++
CP000058_3 184 SLGRMVASLAHQIRTPLSAAMIYASHLAE---------QELPVETQ- 220

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++++ ++ l+++++d+L ++r e +
CP000058_3 221 ----------QRFAARLKDRLHELEHQVRDMLVFARGELP 250

CP000058_1421: domain 1 of 1, from 170 to 235: score 61.3, E = 6.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +sH+LR+PL+aI+++a lL++ t l + q
CP000058_1 170 FAEQMIGIVSHDLRNPLAAIKMAAGLLER---------TQLESRQ-- 205

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+++++r +r+i dlLd++ ++ g
CP000058_1 206 ----------ERILGHIHHSTDRADRMIVDLLDFTHARVG 235

CP000058_1792: domain 1 of 1, from 106 to 172: score 60.8, E = 8.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fl l H+LRTPL+aI++ a++Ll+ +l++
CP000058_1 106 SRNIFLGILGHDLRTPLSAILLGADVLLR--------TNDLGARP-- 142

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i+++++r ++++ dlLd++r + g
CP000058_1 143 ----------TKVASRIYSSVKRANQIVGDLLDFTRSQIG 172

CP000058_4284: domain 1 of 1, from 152 to 218: score 60.5, E = 9.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fla l H+LR PL a+++ +elL + +l+e++
CP000058_4 152 SRDIFLAILGHDLRAPLQAVSMSTELLAR--------KIALDEKT-- 188

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+++i+ +++++ ++++dlL++ r + g
CP000058_4 189 ----------QSYVSRIQTSTRHMGSMVSDLLEFVRSRLG 218

CP000058_2265: domain 1 of 1, from 239 to 303: score 59.6, E = 1.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+a++sHELRTPL+++rg +e++++ + + +q
CP000058_2 239 MRREFMADVSHELRTPLSVLRGELEAIED---------GVHTLDQ-- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++ e+ l++L++dl +ls ++ g
CP000058_2 275 -----------ALMKSLQGEVGMLSKLVDDLYELSLADVG 303

CP000058_3887: domain 1 of 1, from 211 to 277: score 59.1, E = 2.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f++++sHELRTPL ++ +elLle+ ++l+
CP000058_3 211 RERMFTSDVSHELRTPLMVLASSCELLLEN--------PALDLRG-- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +e+i r+ e +++L++ +L l+r + +
CP000058_3 248 ----------RRQVERIGRACEEMRDLVQTFLMLARTQRE 277

CP000058_4047: domain 1 of 1, from 164 to 229: score 58.8, E = 3.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sH+LR+P+++I++++ L++ ++l++ +
CP000058_4 164 AKSRFLAQASHDLRQPIHSISLFTACLRD---------AALGDNE-- 199

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ i+r++ ++L + lLd+ + +g
CP000058_4 200 ----------QRLVNNIDRALSAVEQLFRSLLDIYTLNQG 229

CP000058_4610: domain 1 of 1, from 242 to 308: score 58.5, E = 3.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f +l+HELR P++ ++g a++ l ++++e+
CP000058_4 242 QLAQFSDDLAHELRSPMNNLMGKAQVTLS---------RPRPSEE-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++le+ +e+er++r+i+++L l+ ++
CP000058_4 278 ---------YKQALESCTEELERMSRMISQMLFLASVSQP 308

CP000058_0765: domain 1 of 1, from 180 to 245: score 57.8, E = 5.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla +sH+LR+P+++I +++ L+ ++l++ +
CP000058_0 180 EKERFLAQASHDLRQPIHSIGMFTACLRS---------SPLGDYE-- 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++++ i+r+++ ++L + +Ld+ +++g
CP000058_0 216 ----------RQLVDNIDRSLHNVSQLFRSILDIYTLDSG 245

CP000058_3385: domain 1 of 1, from 204 to 268: score 56.6, E = 1.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l+++sHELR PL+ +r ++ l+++ + ++e
CP000058_3 204 SQRQLLRDVSHELRSPLARLRIALALAER----------AEPAER-- 238

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ re +rl++Li+++L l+r++a+
CP000058_3 239 ----------EKLWPRLGRECDRLEALISEILALARLDAE 268

CP000058_1505: domain 1 of 1, from 796 to 863: score 53.4, E = 1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +PL+a r+++ +L ++ + s++
CP000058_1 796 SKTRFLAAVSHDLMQPLNAARLFSAALSHQQ-------DGISSDA-- 833

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ +++++++ ++Li+dlLd+sr+e+g
CP000058_1 834 ----------QQLVQHLDSSLRSAEDLISDLLDISRLENG 863

CP000058_3297: domain 1 of 1, from 238 to 303: score 52.8, E = 1.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a+++HELRTPLt +r +a+ ++ + ++eqr
CP000058_3 238 RERRFIADAAHELRTPLTILRIHAQNARQ----------AETPEQR- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l+ + + ++r rL ++lL+++r+e
CP000058_3 274 ----------LEALDFLVHGVDRAARLASQLLTMARLEPR 303

CP000058_3821: domain 1 of 1, from 421 to 487: score 51.2, E = 4.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+Ir ++lL++ ++l e r
CP000058_3 421 AIGQLTGGVAHDFNNLLTVIRSCSDLLKA---------PNLEEHRR- 457

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+e i + ++r rL +lL ++r +a
CP000058_3 458 ----------VKYVEAISSTVDRAARLTGQLLAFARRQAL 487

CP000058_1210: domain 1 of 1, from 466 to 532: score 49.8, E = 1.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ Lt I g+++lLl+ ++ ++ +
CP000058_1 466 AMGQLTGGVAHDFNNLLTPIVGTLDLLLR--------RGVGGDRE-- 502

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ + ++aer L+++lL ++r +
CP000058_1 503 ----------QRLISGAMQSAERAKTLVQRLLAFARRQPL 532

CP000058_0826: domain 1 of 1, from 754 to 820: score 49.6, E = 1.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a+++HE+ +P+t+I +a+ L+e + + ++
CP000058_0 754 SIGRLAAGVAHEIGNPITGIACLAQNLRE---------EREEDGEL- 790

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + il++++r +r+++ l+ ++ ++a
CP000058_0 791 ----------KEISSQILEQTKRVSRIVQSLMSFAHAGAH 820

CP000058_2848: domain 1 of 1, from 99 to 163: score 48.9, E = 2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ se a+++HELRTPL+a +g ++ + +e++ +++ q
CP000058_2 99 EVSESSAMIAHELRTPLNAAMGRIQGMIDEVF-------PRNLAQ-- 136

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le ++r++++l++L++dl ls + ag
CP000058_2 137 -------------LEMVHRQLNQLNKLVSDLHLLSLASAG 163

CP000058_0238: domain 1 of 1, from 225 to 283: score 48.3, E = 2.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRTPLt +r+ +el+ +
CP000058_0 225 ERELMLAGVSHDLRTPLTRLRLSLELMND------------------ 253

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ e + r++e ++++++++L + r +
CP000058_0 254 ----------NEFSEGMVRDIEDMDAILDQFLAFIRDGRD 283

CP000058_2485: domain 1 of 1, from 168 to 241: score 46.9, E = 7.4e-13
*->akseflanlsHELRTPLtaIrgyael.....Lleeldkvlagdtels
++++f++ +sHE RTPL+++++ ++l++ + +++++ ++ +
CP000058_2 168 MRDDFMSIVSHEVRTPLNGLILETQLrklhlAKDNA-------SAFT 207

eeqrlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ r ++++ +r++++l rLi+d+Ld sri++g
CP000058_2 208 MEKL-----------RAMVDRDERQIQSLIRLIEDMLDVSRIRTG 241

CP000058_0141: domain 1 of 1, from 371 to 439: score 43.7, E = 5.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ + a++sHEL++PL+aIr yae ++ ld + ++e+
CP000058_0 371 ALGTMSASISHELNQPLAAIRSYAENAEVLLD------HQRTEDA-- 409

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ i + + r+ ++i l+ ++r +
CP000058_0 410 ----------RGNLKLISELTGRMASIIAHLRAFARRDRH 439

CP000058_4936: domain 1 of 1, from 118 to 188: score 42.8, E = 1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++a+++HE ++PL+aI +++++l ++ + e++
CP000058_4 118 QLGELAASIAHEVNQPLSAIVISGNACQRWLA-----TEPVNLEKA- 158

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++e+++ +a+r ++i +++ l++ +
CP000058_4 159 ----------RQAVERMIGDANRAGDIIVRVRALAKRSST 188

CP000058_3123: domain 1 of 1, from 323 to 391: score 42.5, E = 1.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I g +elL++++ + + +e +
CP000058_3 323 AVGQLTGGIAHDFNNLLTGITGSLELLKTRM-----SQGRFTEID-- 362

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+ ++++++r +L +lL +sr ++
CP000058_3 363 -----------RYIGAAQDASKRAASLTHRLLAFSRRQTL 391

CP000058_2487: domain 1 of 1, from 281 to 349: score 40.6, E = 4.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+g +el++++l + + e++
CP000058_2 281 AVGQLTGGIAHDFNNMLTGIIGSLELIRRRL-------ARGNIEDL- 319

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +a+r +L +lL +sr ++
CP000058_2 320 ----------NSLIDLGVTSANRAAALTHRLLAFSRRQSL 349

CP000058_3314: domain 1 of 1, from 311 to 379: score 38.6, E = 1.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L++I+g +el+ + l
CP000058_3 311 AVGQLTGGIAHDFNNLLAGISGSLELITK----------RLAQGR-- 345

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + +y+++++ +++r +L +lL +sr ++
CP000058_3 346 ------VGDVDRYVSVAQGAVRRAASLTHRLLAFSRRQNL 379

CP000058_2158: domain 1 of 1, from 201 to 269: score 37.0, E = 4.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L++++g++++++ ++ ++ ++
CP000058_2 201 AIGQLTGGIAHDFNNVLSGVMGALDMIRLRV-------AAGRVGDI- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ + ++a+r +L ++lL+++r ++
CP000058_2 240 ----------DRYLDAATSSANRAAALTRRLLTFARRQSL 269

CP000058_1653: domain 2 of 2, from 584 to 652: score 36.9, E = 5.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I+g++el+ ++ + +++ +
CP000058_1 584 AVGQLTGGLAHDFNNLLAGISGALELMNTRIA-----QGRWNDVD-- 623

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+ t++ +a+r +L +lL +sr ++
CP000058_1 624 -----------KYIVTAQGAAKRAAALTHRLLAFSRRQTL 652

CP000058_3904: domain 1 of 1, from 412 to 502: score 36.7, E = 5.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a+++HE+++PL aI+ +++ ++++l + +++ eq+
CP000058_3 412 SVGGLAAGMAHEINNPLGAILHNVQNIRRRL----SPELPKNIEQA- 453

peLRl.............edpeyreyletilreaerllrLindlLdlsri
+ ++ + + ++ e +e+ ++l+ i++++ r ++++ +L +sr+
CP000058_3 454 ----EadgidlaqvnhylESREVPKLLDGIQQAGARAAKIVSHMLNFSRL 499

eag<-*
+
CP000058_3 500 SSR 502

CP000058_3730: domain 1 of 1, from 409 to 477: score 34.8, E = 1.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +++ +++HEL++PL+a+r+++ ++l + +++
CP000058_3 409 AIGQMSTSIAHELNQPLAALRTLSGNTVRFL-------ERGALDTA- 447

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ti + ++r+ r+ l+ ++r +
CP000058_3 448 ----------SANLRTINDLVDRMGRITASLRAFARRGDD 477

CP000058_0904: domain 1 of 1, from 326 to 394: score 34.0, E = 3.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+++g ++l++ ++ + + e
CP000058_0 326 AVGQLTGGIAHDFNNMLTGVIGSLDLIKLRMA------SGRLEGV-- 364

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +l +a+r +L ++lL +sr ++
CP000058_0 365 ----------ERFMDAALISAQRAASLTDRLLAFSRRQSL 394

CP000058_1134: domain 1 of 1, from 280 to 308: score 32.6, E = 8.4e-09
*->akseflanlsHELRTPLtaIrgyaelLle<-*
+++++++++sH+LRTP+t +r+ +elL++
CP000058_1 280 ERGQLFSAISHDLRTPITRLRLRVELLED 308

CP000058_2367: domain 1 of 1, from 127 to 197: score 32.3, E = 9.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ L ++ gy++l+ +a+ ++ + + +
CP000058_2 127 ALGQLTGGIAHDFNNLLQVMGGYIDLIGS-----AAEKPTIDVQRV- 167

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ +++++er + L +lL ++r +
CP000058_2 168 ----------QRSVHHAKSAVERASTLTKQLLAFARKQKL 197

CP000058_1315: domain 1 of 1, from 321 to 389: score 31.7, E = 1.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L ++ g+ elLl + e +
CP000058_1 321 AVGQLTGGLAHDFNNLLMGVTGNMELLLS---------RIRQERFT- 357

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +y++ +l+ ++r +L +lL +sr ++
CP000058_1 358 --------ELDRYINAALEGSRRAASLTHRLLAFSRRQTL 389

CP000058_4061: domain 1 of 1, from 203 to 268: score 31.5, E = 1.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +a+++HEL TPL++++ +++ ++ +++++ +
CP000058_4 203 AVATQAAGAAHELGTPLATMSVLLKEMRQ----------DQGDPAL- 238

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++++++++++ + +++l + +
CP000058_4 239 ----------QDDLSVLQEQVKQCKQTLQQLVRAAEANRR 268

CP000058_4219: domain 2 of 2, from 693 to 763: score 31.3, E = 2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e+ +l+HE+++PL+++r+++ l++l g+++ + e +
CP000058_4 693 TLGEMSTGLAHEINQPLNVMRMAVVNVLKRL-----GRGDVDIEYL- 733

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l++i+ +++r r ++ ++ + r +
CP000058_4 734 ----------TEKLNRIDTQVQRAARVVDHMRVFGRRSEV 763

CP000058_1912: domain 1 of 1, from 137 to 189: score 30.7, E = 2.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++la++sH+LRTPL+ +++ +e ++e
CP000058_1 137 QRGRMLAAVSHDLRTPLSRLKLRVEQIEE------------------ 165

peLRledpeyreyletilreaerllrLindlLdl<-*
++ + ++++ + ++++ L +
CP000058_1 166 ----------PRLHGQMTQDLNDMISMLDATLAY 189

CP000058_2085: domain 1 of 1, from 203 to 269: score 30.1, E = 4.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++H++++ L a+++ ++l ++ ++ ++ +
CP000058_2 203 SLGMLTASIAHDFNNLLQALSASLQLVRM--------RSRRPTDV-- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +t lr++++ ++L+ +lLd r + +
CP000058_2 240 ----------ETLSDTGLRAVDHGRQLVTRLLDSVRQDGP 269

CP000058_3819: domain 1 of 1, from 363 to 431: score 28.8, E = 1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a+l+HE+++PLta r+ + + + l ++ r+
CP000058_3 363 ALGQMSAALAHEINQPLTAQRMQLATVRL-----------LLDQGRI 398

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ ++l +++++ r+ +L + l +++r
CP000058_3 399 DEA-------CKALVPVDQQLTRMAALTSHLKTFARKSPS 431


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-15 1 0|=
-14 14 0|=
-13 50 3|*===
-12 166 113|=======*===
-11 487 590|=============================== *
-10 777 1096|================================================= *
-9 929 1131|==========================================================*
-8 872 847|====================================================*==
-7 668 534|=================================*========
-6 397 307|===================*=====
-5 264 168|==========*======
-4 126 90|=====*==
-3 75 47|==*==
-2 40 25|=*=
-1 28 13|*=
0 15 6|*
1 3 3|*
2 6 1|*
3 4 0|=
4 0 0|
5 1 0|=
> 6 61 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 351.3935
P(chi-square) = 0

Total sequences searched: 4984

Whole sequence top hits:
tophits_s report:
Total hits: 56
Satisfying E cutoff: 56
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 56
Satisfying E cutoff: 56
Total memory: 43K


Acknowledgements:

This research is funded by:

Developed by: