Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Pseudomonas syringae pv. syringae B728a  

Data for CP000075  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HWE_HK.hmm [HWE_HK]
Sequence database: CP000075.Gprot.fsa
per-sequence score cutoff: >= 60.0 [TC1]
per-domain score cutoff: >= 60.0 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HWE_HK
Accession: PF07536.4
Description: HWE histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000075_2384 CDS_2765961-2762950 115.5 4.5e-39 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000075_2384 1/1 811 891 .. 1 85 [] 115.5 4.5e-39

Alignments of top-scoring domains:
CP000075_2384: domain 1 of 1, from 811 to 891: score 115.5, E = 4.5e-39
*->ELnHRVKNtLAvVQSiarQTlRnaasldefveaFsgRLqALsraHdL
ELnHRVKNtLA+VQ+ia T++++asl++f+ +F +RL ALs+aHd
CP000075_2 811 ELNHRVKNTLATVQAIASLTVNSSASLESFHKSFGARLFALSQAHDA 857

VpLtrseWagAdLreLleaeLaPyggedaeRitlsGPd<-*
L r+eW + +L +L+e+ + g a+Ri ++G++
CP000075_2 858 --LARAEWISTELVDLIEQLQEQDSG--AHRISFEGDP 891


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-14 9 0|=
-13 58 0|====
-12 399 0|========================
-11 523 41|==*============================
-10 801 526|==============================*=================
-9 881 1302|==================================================== *
-8 964 1352|========================================================= *
-7 572 908|================================== *
-6 362 495|====================== *
-5 257 245|==============*=
-4 106 116|======*
-3 66 54|===*
-2 42 24|=*=
-1 23 11|*=
0 16 5|*
1 7 2|*
2 1 1|*
3 0 0|
4 0 0|
> 5 2 -|=


% Statistical details of theoretical EVD fit:
mu = -7.9989
lambda = 0.7843
chi-sq statistic = 6174.6313
P(chi-square) = 0

Total sequences searched: 5136

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: