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Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Psychrobacter arcticus 273-4  

Data for CP000082  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000082.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000082_0347 CDS_430705-434112 94.3 1.1e-26 1
CP000082_1922 CDS_2371478-2370387 63.9 4.8e-18 1
CP000082_2021 CDS_2490266-2488581 62.2 1.5e-17 1
CP000082_2077 CDS_2553009-2554472 53.4 4.6e-15 1
CP000082_1163 CDS_1390467-1391780 51.8 1.3e-14 1
CP000082_1821 CDS_2239574-2241685 51.5 1.6e-14 1
CP000082_1597 CDS_1952058-1953545 51.2 1.9e-14 1
CP000082_2020 CDS_2486863-2488431 44.7 1.3e-12 1
CP000082_1537 CDS_1880091-1881479 40.5 2.1e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000082_0347 1/1 306 372 .. 1 87 [] 94.3 1.1e-26
CP000082_1922 1/1 134 200 .. 1 87 [] 63.9 4.8e-18
CP000082_2021 1/1 320 385 .. 1 87 [] 62.2 1.5e-17
CP000082_2077 1/1 253 325 .. 1 87 [] 53.4 4.6e-15
CP000082_1163 1/1 223 289 .. 1 87 [] 51.8 1.3e-14
CP000082_1821 1/1 243 314 .. 1 87 [] 51.5 1.6e-14
CP000082_1597 1/1 251 317 .. 1 87 [] 51.2 1.9e-14
CP000082_2020 1/1 272 330 .. 1 87 [] 44.7 1.3e-12
CP000082_1537 1/1 157 256 .. 1 87 [] 40.5 2.1e-11

Alignments of top-scoring domains:
CP000082_0347: domain 1 of 1, from 306 to 372: score 94.3, E = 1.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL++I g++ lL + +el++eq
CP000082_0 306 AKSAFLANISHELRTPLNSIDGFINLLAR--------HGELNPEQ-- 342

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ti++++ +ll+L+nd+Ld+s+ieag
CP000082_0 343 ----------DLYVQTIRKSSAHLLALVNDVLDFSKIEAG 372

CP000082_1922: domain 1 of 1, from 134 to 200: score 63.9, E = 4.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHEL TPLt+++gy+e + ++ + +
CP000082_1 134 MRRDFVANVSHELGTPLTVLMGYLENFSD---------QPDMPAH-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r+ +e + +++ r++r +ndlL lsrie +
CP000082_1 170 ---------WRRGFELMTQQTARMNRVVNDLLLLSRIEIE 200

CP000082_2021: domain 1 of 1, from 320 to 385: score 62.2, E = 1.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+++++sHELRTP++ Ir+++e+L + te +
CP000082_2 320 SQRELTRAVSHELRTPVARIRFAVEMLAD---------TEDEDSR-- 355

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++++e l+ Li+++L+++++e+g
CP000082_2 356 ----------FMQRDFIDEDIEALNGLIDEILTYAKLEEG 385

CP000082_2077: domain 1 of 1, from 253 to 325: score 53.4, E = 4.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
+ ++f+a++sHELR PL+a+++ a+lL+ + l+ ++ ++ q+
CP000082_2 253 REQRFTADASHELRSPLAALKLQADLLQQ----QiLPLSGVEDDNQL 295

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++i + +er +L+++lL l++ie +
CP000082_2 296 -----------FYHTQKISNGIERATHLVEQLLILAKIEPQ 325

CP000082_1163: domain 1 of 1, from 223 to 289: score 51.8, E = 1.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ ++sHELRTPLt I+g++e+L +l e ++
CP000082_1 223 REQLFTGDVSHELRTPLTIIMGASEVLASQL--------EDNSRL-- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ ++i a+ ++ i+ lL lsr+ ++
CP000082_1 260 ----------SEFANRISTTAKETSETISALLLLSRAPEQ 289

CP000082_1821: domain 1 of 1, from 243 to 314: score 51.5, E = 1.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +la++sHELRTP+t Ir+ +e++ + ++l+++ ++
CP000082_1 243 ANNLLLAHASHELRTPITRIRLQIEMMDMLT-------GPLPSDNKA 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i r++ l++L++ +L sr++ag
CP000082_1 283 KF--------DKRAQAINRDLSGLNDLVESILLVSRLDAG 314

CP000082_1597: domain 1 of 1, from 251 to 317: score 51.2, E = 1.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f n++HELRTPL+++ + ++++l t++ + +
CP000082_1 251 SLSRFSDNIAHELRTPLATLGTQTQVMLS---------TPRASNE-- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e l+ ++ +e+l+ Lin++L l++ + g
CP000082_1 287 ---------YVEQLHHQHDTLEQLSTLINNMLLLAKTQKG 317

CP000082_2020: domain 1 of 1, from 272 to 330: score 44.7, E = 1.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRTPLt +r++ae+L +
CP000082_2 272 ERTIMLAGISHDLRTPLTRMRLTAEMLPD------------------ 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e ++ ++e ++++++++ + + ++
CP000082_2 301 ----------DFFREGLIYDIEDMDAILEQFISFMKDGSD 330

CP000082_1537: domain 1 of 1, from 157 to 256: score 40.5, E = 2.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldk..............
+ +l++++HE+++PL++Irg+a+lL++++ k ++++ ++ + +++
CP000082_1 157 VARHMLRSVAHEIKNPLAGIRGAAQLLQRQFIKfsessfnhysadtd 203

..........v.lagdtelseeqrlpeLRledpeyreyletilreaerll
+++ ++ + + + ++ ++ r y+++i++e++rl
CP000082_1 204 htslisnltvKpDNHLQKTADKL------------RSYTDIIISETDRLT 241

rLindlLdlsrieag<-*
+Li ++L ++ +
CP000082_1 242 QLIGQFLGSNQLPHW 256


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 6 0|=
-13 18 1|*==
-12 87 48|=====*=====
-11 205 251|========================== *
-10 374 466|=============================================== *
-9 424 481|===================================================== *
-8 363 360|============================================*=
-7 253 227|============================*===
-6 188 130|================*=======
-5 84 71|========*==
-4 47 38|====*=
-3 30 20|==*=
-2 12 10|=*
-1 8 5|*
0 4 2|*
1 2 1|*
2 2 0|=
3 0 0|
> 4 13 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 102.2777
P(chi-square) = 6.315e-17

Total sequences searched: 2147

Whole sequence top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: