Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Data for CP000082  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000082.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000082_0603 CDS_719987-717864 70.2 1.1e-20 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000082_0603 1/1 492 564 .. 1 70 [] 70.2 1.1e-20

Alignments of top-scoring domains:
CP000082_0603: domain 1 of 1, from 492 to 564: score 70.2, E = 1.1e-20
*->ERaRIARELHDsvgQsLsaiklqlelarrllds..dkdpe.eareal
ER IARELHDs++QsLs +k+q+++++r+l +++d+ +e +r+++
CP000082_0 492 ERSTIARELHDSLAQSLSYLKIQISVLERHLKNgsDEQNEaSVRQHI 538

deirelarealaevRrllgdLRpaal<-*
d+i++ ++ a++++R+ll ++R +++
CP000082_0 539 DQIKAGLSSAYQQLRDLLITFRLTID 564


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 7 0|=
-13 48 0|======
-12 96 23|==*=========
-11 169 194|====================== *
-10 388 450|================================================= *
-9 441 511|======================================================== *
-8 293 394|===================================== *
-7 265 248|==============================*===
-6 161 140|=================*===
-5 110 75|=========*====
-4 55 39|====*==
-3 45 20|==*===
-2 17 10|=*=
-1 10 5|*=
0 5 2|*
1 2 1|*
2 4 0|=
> 3 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 334.2864
P(chi-square) = 0

Total sequences searched: 2147

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: