Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Colwellia psychrerythraea 34H  

Data for CP000083  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000083.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000083_3990 CDS_4332134-4334980 98.1 2.2e-27 1
CP000083_1774 CDS_1877626-1874624 96.2 7.7e-27 1
CP000083_1170 CDS_1241719-1243023 86.4 4.8e-24 1
CP000083_4347 CDS_4722636-4719688 83.7 2.7e-23 1
CP000083_4035 CDS_4380237-4375186 83.5 3.1e-23 1
CP000083_0618 CDS_649877-648387 73.6 1.9e-20 1
CP000083_4382 CDS_4766540-4763127 72.1 5.1e-20 1
CP000083_2409 CDS_2589644-2591998 71.0 1.1e-19 1
CP000083_4138 CDS_4501728-4503263 65.0 5.4e-18 1
CP000083_1830 CDS_1942268-1939704 64.3 8.4e-18 1
CP000083_1698 CDS_1795593-1794175 63.5 1.4e-17 1
CP000083_0374 CDS_406075-404960 61.5 5.3e-17 1
CP000083_1814 CDS_1915762-1917027 59.5 2e-16 1
CP000083_3198 CDS_3426571-3428115 56.6 1.3e-15 1
CP000083_0723 CDS_766702-763721 56.3 1.6e-15 1
CP000083_1388 CDS_1464060-1465379 54.4 5.4e-15 1
CP000083_4782 CDS_5216631-5214787 51.3 4.1e-14 1
CP000083_4461 CDS_4852656-4851364 50.3 8e-14 1
CP000083_3828 CDS_4136488-4134704 50.2 8.2e-14 1
CP000083_3084 CDS_3304318-3303032 48.2 3e-13 1
CP000083_0906 CDS_948678-945172 47.2 5.8e-13 1
CP000083_1960 CDS_2083066-2084901 46.2 1.1e-12 1
CP000083_2457 CDS_2628656-2627349 45.8 1.5e-12 1
CP000083_1459 CDS_1540424-1541719 44.2 4.1e-12 1
CP000083_2982 CDS_3200211-3201596 43.5 6.8e-12 1
CP000083_2324 CDS_2501867-2503276 42.7 1.1e-11 1
CP000083_3312 CDS_3550442-3553996 41.1 3.1e-11 1
CP000083_1576 CDS_1668522-1671305 37.5 3.4e-10 1
CP000083_0648 CDS_683426-682125 37.1 4.2e-10 1
CP000083_2715 CDS_2907820-2906282 36.5 6.3e-10 1
CP000083_4286 CDS_4658232-4659527 36.0 8.7e-10 1
CP000083_0054 CDS_68317-71787 34.5 2.3e-09 1
CP000083_3857 CDS_4178131-4175915 29.6 5.9e-08 1
CP000083_2643 CDS_2831078-2829639 28.9 8.9e-08 1
CP000083_3167 CDS_3396029-3394233 28.8 9.5e-08 2
CP000083_1887 CDS_1998726-2002712 27.5 2.2e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000083_3990 1/1 303 368 .. 1 87 [] 98.1 2.2e-27
CP000083_1774 1/1 469 534 .. 1 87 [] 96.2 7.7e-27
CP000083_1170 1/1 205 272 .. 1 87 [] 86.4 4.8e-24
CP000083_4347 1/1 489 555 .. 1 87 [] 83.7 2.7e-23
CP000083_4035 1/1 944 1009 .. 1 87 [] 83.5 3.1e-23
CP000083_0618 1/1 270 338 .. 1 87 [] 73.6 1.9e-20
CP000083_4382 1/1 579 644 .. 1 87 [] 72.1 5.1e-20
CP000083_2409 1/1 291 356 .. 1 87 [] 71.0 1.1e-19
CP000083_4138 1/1 276 338 .. 1 81 [. 65.0 5.4e-18
CP000083_1830 1/1 492 557 .. 1 87 [] 64.3 8.4e-18
CP000083_1698 1/1 242 308 .. 1 87 [] 63.5 1.4e-17
CP000083_0374 1/1 139 195 .. 1 79 [. 61.5 5.3e-17
CP000083_1814 1/1 219 283 .. 1 87 [] 59.5 2e-16
CP000083_3198 1/1 292 356 .. 1 87 [] 56.6 1.3e-15
CP000083_0723 1/1 462 527 .. 1 87 [] 56.3 1.6e-15
CP000083_1388 1/1 223 288 .. 1 87 [] 54.4 5.4e-15
CP000083_4782 1/1 389 457 .. 1 87 [] 51.3 4.1e-14
CP000083_4461 1/1 223 283 .. 1 87 [] 50.3 8e-14
CP000083_3828 1/1 379 447 .. 1 87 [] 50.2 8.2e-14
CP000083_3084 1/1 210 275 .. 1 87 [] 48.2 3e-13
CP000083_0906 1/1 783 848 .. 1 87 [] 47.2 5.8e-13
CP000083_1960 1/1 392 460 .. 1 87 [] 46.2 1.1e-12
CP000083_2457 1/1 234 295 .. 5 87 .] 45.8 1.5e-12
CP000083_1459 1/1 197 263 .. 1 87 [] 44.2 4.1e-12
CP000083_2982 1/1 229 294 .. 1 87 [] 43.5 6.8e-12
CP000083_2324 1/1 264 322 .. 1 87 [] 42.7 1.1e-11
CP000083_3312 1/1 782 848 .. 1 87 [] 41.1 3.1e-11
CP000083_1576 1/1 553 619 .. 1 87 [] 37.5 3.4e-10
CP000083_0648 1/1 212 277 .. 1 87 [] 37.1 4.2e-10
CP000083_2715 1/1 241 309 .. 1 87 [] 36.5 6.3e-10
CP000083_4286 1/1 215 282 .. 1 87 [] 36.0 8.7e-10
CP000083_0054 1/1 777 843 .. 1 87 [] 34.5 2.3e-09
CP000083_3857 1/1 500 570 .. 1 87 [] 29.6 5.9e-08
CP000083_2643 1/1 245 311 .. 1 87 [] 28.9 8.9e-08
CP000083_1887 1/1 792 858 .. 1 87 [] 27.5 2.2e-07

Alignments of top-scoring domains:
CP000083_3990: domain 1 of 1, from 303 to 368: score 98.1, E = 2.2e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l+ t+l+e q
CP000083_3 303 VKSEFLANMSHELRTPLNGVIGFTRQVLK---------TPLTENQ-- 338

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+ti+r+a+ ll +ind+Ld+s+++ag
CP000083_3 339 ----------RDYLQTIDRSANNLLTIINDILDFSKLDAG 368

CP000083_1774: domain 1 of 1, from 469 to 534: score 96.2, E = 7.7e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++++g++elL + t+l++eq
CP000083_1 469 AKSVFLASMSHEIRTPMNGMIGTLELLTD---------TKLTSEQ-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y +til ++e+ll+++nd+Ld+s+ieag
CP000083_1 505 ----------QKYAQTILYSGESLLDILNDILDYSKIEAG 534

CP000083_1170: domain 1 of 1, from 205 to 272: score 86.4, E = 4.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHEL+TPLt++rgy+e++++ s+e
CP000083_1 205 MRRDFVANVSHELKTPLTVVRGYVEMIQA------------SPEA-- 237

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+dp ++++++ti+ ++ r++rL+++lL l++ e++
CP000083_1 238 -----FDPHWQKAFQTIEGQVSRMDRLVEQLLNLAKVENN 272

CP000083_4347: domain 1 of 1, from 489 to 555: score 83.7, E = 2.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHE+RTPLtaI g+ae++ ++ + +++
CP000083_4 489 VKSQFLANMSHEIRTPLTAIVGHAEAIIH---------DDIDKDKV- 525

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +e+i+ + +ll+Lind+Ldlsriea+
CP000083_4 526 ----------HEDIEVIHGNSLHLLELINDILDLSRIEAN 555

CP000083_4035: domain 1 of 1, from 944 to 1009: score 83.5, E = 3.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP++aI+g+++l+l el+ +
CP000083_4 944 AKSDFLANMSHEIRTPMNAIMGMSHLALG---------CELDRKP-- 979

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+ +++++ae+ll +ind+Ld+s+ieag
CP000083_4 980 ----------KNYVTKVYKAAESLLGIINDILDFSKIEAG 1009

CP000083_0618: domain 1 of 1, from 270 to 338: score 73.6, E = 1.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e+la+lsH+LRTPL++++gy+e+L ++ ++ls+ ++
CP000083_0 270 IRRELLAHLSHDLRTPLATMQGYIEILAIKG-------DNLSSIEK- 308

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl t++r + +l rLi+++ +l+ +e+g
CP000083_0 309 ----------QDYLATVQRNVSQLKRLIDQIFELAHLENG 338

CP000083_4382: domain 1 of 1, from 579 to 644: score 72.1, E = 5.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k +flan+sHE RTP++a++g+ +lL t l+ q
CP000083_4 579 VKIQFLANMSHEVRTPINAMQGMMDLLAH---------TSLDTRQ-- 614

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl +++++ ll+L+++lLdls+ieag
CP000083_4 615 ----------LHYLVNAQSASSTLLHLVDELLDLSKIEAG 644

CP000083_2409: domain 1 of 1, from 291 to 356: score 71.0, E = 1.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTP+++++g+++lL++ el+++q
CP000083_2 291 AKSQFLATMSHEIRTPMNGMLGMIQLLQN---------NELTDPQ-- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++++e ll+ + +L+++++e+g
CP000083_2 327 ----------SHRVKILHDSTEALLETFDHVLQFAQLEEG 356

CP000083_4138: domain 1 of 1, from 276 to 338: score 65.0, E = 5.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks f++++sHEL+TPL+aIr +el+ +++ ++l+e+q
CP000083_4 276 QKSSFIRHISHELKTPLAAIREGTELIYDNS------VGPLNEDQ-- 314

peLRledpeyreyletilreaerllrLindlLdl<-*
+e+ ++i+ +++rl+rLi+dlLd+
CP000083_4 315 ----------QEICDIIRVSVNRLQRLIEDLLDF 338

CP000083_1830: domain 1 of 1, from 492 to 557: score 64.3, E = 8.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +PL+a +++++ L e +l +++
CP000083_1 492 SKTKFLAAVSHDLLQPLNAAQLFTSSLME---------RPLEDKT-- 527

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+++ ++++ l++Li+ l d+s+++ag
CP000083_1 528 ----------KNQLNSVANSLDDLENLISTLVDISKLDAG 557

CP000083_1698: domain 1 of 1, from 242 to 308: score 63.5, E = 1.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +++l ++sHELR PLt +++++ l+++ ++ ++
CP000083_1 242 AHQRLLGDVSHELRSPLTRLQLAVALAEK---------NMGNDVEQ- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++ + e+erl+++i d+L+lsr+e++
CP000083_1 279 ----------QKHLNRCETEVERLDEMIADVLTLSRLEHN 308

CP000083_0374: domain 1 of 1, from 139 to 195: score 61.5, E = 5.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+HE+++PL ++rg+a+lL + e ++eq
CP000083_0 139 AARDLIKGLAHEIKNPLGGLRGAAQLLSK----------EVTSEQ-- 173

peLRledpeyreyletilreaerllrLindlL<-*
+ey++ i+++a+rl +L+++lL
CP000083_0 174 ----------QEYTSMIIEQADRLTNLVDRLL 195

CP000083_1814: domain 1 of 1, from 219 to 283: score 59.5, E = 2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f++++sHELRTP+t+Irg +++L++ l++e++
CP000083_1 219 REQAFTRYVSHELRTPMTVIRGGISILRR-----------LDDEKV- 253

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i++++ +++Li +L ++r e
CP000083_1 254 ----------KKQSSRIDNAVIEMEQLIHTFLLMARNEDS 283

CP000083_3198: domain 1 of 1, from 292 to 356: score 56.6, E = 1.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +lan+sHELRTP++ I+g +e++++ + ++ +
CP000083_3 292 SRNTWLANISHELRTPIAIIKGEIEAIED---------GIRPLDL-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++ +e+++l +L+ndl ls +e g
CP000083_3 328 -----------NSLSSLNDEVNHLHKLVNDLSALSNAEIG 356

CP000083_0723: domain 1 of 1, from 462 to 527: score 56.3, E = 1.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+an+sHE+RTPLt I g ++ + + +e +
CP000083_0 462 LKDKFIANISHEFRTPLTIINGIIDRYIT---------KTTNELE-- 497

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l t++r + rl r++++lL+lsr+ +
CP000083_0 498 ----------SEELTTAKRNGLRLVRMVEQLLELSRLSDN 527

CP000083_1388: domain 1 of 1, from 223 to 288: score 54.4, E = 5.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++sH+LRTPL+ Ir+ +++++e e ++ r
CP000083_1 223 DIKLLSSAVSHDLRTPLARIRFGIDTIQE----------EDDPVLR- 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++i + ++ + +L++ lL ++r+++
CP000083_1 259 ----------KRFEQRISDNVDEMVDLVESLLSYARLDQT 288

CP000083_4782: domain 1 of 1, from 389 to 457: score 51.3, E = 4.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+ a+++HE+++PL +I+gyaelL+ t++s+e++
CP000083_4 389 ALGELSASVAHEINNPLGVISGYAELLQL-------TNTTASPEDI- 427

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ilr+ +r+ +++ l +sr ++
CP000083_4 428 ----------LAKSAIILRSCDRITHIVKSLKKFSRSDEA 457

CP000083_4461: domain 1 of 1, from 223 to 283: score 50.3, E = 8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e ++
CP000083_4 223 DRNLLMAGISHDLRTPLTRIRLASEMMNE---------SD------- 253

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e i+ +++ ++++i+++ d+ r ++
CP000083_4 254 ----------DFLKEGIETDIDDMNNIIDQFIDYIRHDSK 283

CP000083_3828: domain 1 of 1, from 379 to 447: score 50.2, E = 8.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f +sH+L+ PL+aI+ ++ + e+ + ++e
CP000083_3 379 DLEQFSYVASHDLKSPLNAIKQLVGWIAEDCQ------DIIPDES-- 417

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l + + ++r+ +L+ndlLd+sri
CP000083_3 418 ----------KKHLALLAQRSDRMMKLLNDLLDYSRINRS 447

CP000083_3084: domain 1 of 1, from 210 to 275: score 48.2, E = 3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e++ ++sHELRTPL+ ++++++L + +++e+r
CP000083_3 210 AHKELTNAVSHELRTPLARTKFALQMLDT----------IKDDEKR- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y + i +++ l++Lin++L ++ ++
CP000083_3 246 ----------AKYQKQISNDVCELEELINEMLIYAAFDND 275

CP000083_0906: domain 1 of 1, from 783 to 848: score 47.2, E = 5.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +P +a+++++++L++ ++e
CP000083_0 783 SKTRFLAAASHDLMQPFNALSLFTSMLKK---------KVENDEL-- 818

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + i+++++ ++L++dl ++sr++++
CP000083_0 819 ----------AQLANNIDDSLNVVEALLSDLVEISRLDNN 848

CP000083_1960: domain 1 of 1, from 392 to 460: score 46.2, E = 1.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + a++ HE+++PLta+r y+e +l++++ ++++
CP000083_1 392 LIGSMSASINHEINQPLTALRSYSENALAYQE------RSMTDKV-- 430

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ i+ ++rl+++++++ +s+ +g
CP000083_1 431 ----------KNNLSLIIGLVDRLSDIVSQFNSFSKKSTG 460

CP000083_2457: domain 1 of 1, from 234 to 295: score 45.8, E = 1.5e-12
*->flanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLR
f++++sHELRTP++ I+ ++e+ ++ ++ ++
CP000083_2 234 FTRDVSHELRTPVSIIKNAVEVYRN---------QHSTDVS------ 265

ledpeyreyletilreaerllrLindlLdlsrieag<-*
+++i +++ ++++ + lL+l+r e+
CP000083_2 266 ------NPVIDRISQASTQMEQTVTTLLTLAREEHT 295

CP000083_1459: domain 1 of 1, from 197 to 263: score 44.2, E = 4.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++l+H++RTPL+a ++y+e L + +l e r
CP000083_1 197 SLGKMVSTLAHQIRTPLSAAILYSENLSN---------NKLAENYR- 233

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ ++ l++++nd+L +s+ + +
CP000083_1 234 ----------IKFQGKLNARLHDLEQQVNDMLLFSKSGKE 263

CP000083_2982: domain 1 of 1, from 229 to 294: score 43.5, E = 6.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ ++ HELRTPL+ I++++ +L++ +l++eq
CP000083_2 229 ESQVFAQAVPHELRTPLSRIQLATGILRN---------KNLTAEQ-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i++ ++ +++L +++ ++s++ +
CP000083_2 265 ----------TSLVDNIDQYIDDIDELCSQIIQFSKLNIQ 294

CP000083_2324: domain 1 of 1, from 264 to 322: score 42.7, E = 1.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + la++sH+LRTPLt++r++ae + +
CP000083_2 264 HRARSLAAMSHDLRTPLTSMRLHAEFISD------------------ 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i++ ++ ++++ +++ ++
CP000083_2 293 ----------EVTQDKIIEKLDEMEHITKATISFAKQDSW 322

CP000083_3312: domain 1 of 1, from 782 to 848: score 41.1, E = 3.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+ l + sH+L +PL+a r++++++ ++ s e+
CP000083_3 782 KKSQYLKACSHDLLQPLSAARLFSSAISL--------SPRVSNEE-- 818

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re +++i++++e ++L+ dl +++rie+g
CP000083_3 819 ----------REQIKKIDNSLEIANSLLLDLNEIARIESG 848

CP000083_1576: domain 1 of 1, from 553 to 619: score 37.5, E = 3.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ L ++g+ elL+ +l+ + +l
CP000083_1 553 ALGKLTGGIAHDFNNLLGIVSGFGELLEL----------KLGQDPKL 589

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y + i+ ++er ++L + lLd+s+ e+
CP000083_1 590 ----------SKYCRQIITASERGSELTRKLLDFSKQESK 619

CP000083_0648: domain 1 of 1, from 212 to 277: score 37.1, E = 4.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++lsH++RTP++ +r+ +e++l+ +s +++
CP000083_0 212 DNKILARSLSHDIRTPMSCLRFGIEAALD----------SKSMDKK- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl ++++e+ r++++ + +Ld++ +e +
CP000083_0 248 ----------NSYLTRMDNELTRMEEMTSLFLDYASMERQ 277

CP000083_2715: domain 1 of 1, from 241 to 309: score 36.5, E = 6.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a+++HEL+TPL++++ +++ L el+e+
CP000083_2 241 RERHFAADAAHELKTPLSVLKINVHNLSQ----------ELNEQG-- 275

peLRledpeyrey....letilreaerllrLindlLdlsrieag<-*
++y+ + ++ ++ ++er+ + i+++L l r
CP000083_2 276 ----------QQYpinlIKPLKVSVERMGHVIDQILHLNRTNPD 309

CP000083_4286: domain 1 of 1, from 215 to 282: score 36.0, E = 8.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +++ l+HELR+ Lt + +a++Ll + + +e+q+
CP000083_4 215 TQQNLIRVLAHELRNSLTPMASMADTLLCN--------DSFNEDQV- 252

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l++i++ ++rll+ i++ +ls++ a+
CP000083_4 253 ----------RLVLSRIRQRSNRLLSFIEQYSQLSQLPAP 282

CP000083_0054: domain 1 of 1, from 777 to 843: score 34.5, E = 2.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+ l + sH+L +PL a r+++++L e +l+ +q
CP000083_0 777 KKSQYLNACSHDLMQPLEAARLFTSALSE--------QNNLTTDQ-- 813

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e i+r+++ ++L+ dl +++r+e+g
CP000083_0 814 ----------QRQVENIDRSLKAANDLLADLAEIARLESG 843

CP000083_3857: domain 1 of 1, from 500 to 570: score 29.6, E = 5.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + + lsHELRTP++++++ ++ L l ++++ +++
CP000083_3 500 YLENMSSRLSHELRTPIAVVKTSLDNLSL-----LETQQAQTGKTN- 540

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e+++ ++ l+ ++ ++ + +r+e+
CP000083_3 541 ----------NPYIERAQTGIKTLNLILTNMSEATRLEQM 570

CP000083_2643: domain 1 of 1, from 245 to 311: score 28.9, E = 8.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++++++HEL+TP++ ++ +e++ + +++ e +
CP000083_2 245 SEQRLTSDIAHELKTPISELMSVTEIAIK---------YPQNKEVL- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +++ + r+++++ lL + + +
CP000083_2 282 ----------ATFKDDVISISMRMNNIVKSLLMFNKTNSK 311

CP000083_1887: domain 1 of 1, from 792 to 858: score 27.5, E = 2.2e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H+ ++ L +I+gy+++L++ + ++ + +
CP000083_1 792 ALGQLTGGIAHDYNNMLGVIIGYSDILKT---------QLKDQPGL- 828

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++e i+++++r +L + lL +sr
CP000083_1 829 ----------LNFVEQIHQAGDRGAQLTRKLLSFSRQTPD 858


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-15 20 0|==
-14 79 0|======
-13 168 3|*===========
-12 349 112|=======*================
-11 579 582|======================================*
-10 816 1079|======================================================= *
-9 857 1115|==========================================================*
-8 756 834|=================================================== *
-7 511 526|===================================*
-6 280 302|=================== *
-5 192 166|===========*=
-4 112 88|=====*==
-3 57 46|===*
-2 48 24|=*==
-1 12 12|*
0 7 6|*
1 11 3|*
2 3 1|*
3 3 0|=
4 0 0|
5 2 0|=
6 0 0|
7 0 0|
8 1 0|=
9 3 0|=
10 1 0|=
11 0 0|
12 0 0|
13 1 0|=
14 1 0|=
15 2 0|=
16 0 0|
17 0 0|
18 1 0|=
> 19 38 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 667.7564
P(chi-square) = 0

Total sequences searched: 4910

Whole sequence top hits:
tophits_s report:
Total hits: 36
Satisfying E cutoff: 36
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 35
Satisfying E cutoff: 35
Total memory: 35K


Acknowledgements:

This research is funded by:

Developed by: