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2 accessions found for Burkholderia thailandensis E264  

Data for CP000085  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000085.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000085_0141 CDS_172864-170006 91.9 6e-26 1
CP000085_0144 CDS_179521-177029 71.6 3.6e-20 1
CP000085_1371 CDS_1624983-1626377 67.8 4.2e-19 1
CP000085_1758 CDS_2132765-2134114 60.1 6.2e-17 1
CP000085_0373 CDS_446839-445388 59.2 1.2e-16 1
CP000085_1774 CDS_2155797-2154682 57.3 4e-16 1
CP000085_1183 CDS_1392408-1391092 56.0 9.1e-16 1
CP000085_1715 CDS_2086309-2084795 55.6 1.2e-15 1
CP000085_1002 CDS_1192310-1194748 46.5 4.4e-13 1
CP000085_1732 CDS_2102323-2103651 46.5 4.5e-13 1
CP000085_0899 CDS_1059163-1060527 45.3 9.5e-13 1
CP000085_0728 CDS_864182-865258 39.3 5e-11 2
CP000085_0583 CDS_687739-686960 29.0 4e-08 1
CP000085_0498 CDS_592176-593270 28.4 6.2e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000085_0141 1/1 471 536 .. 1 87 [] 91.9 6e-26
CP000085_0144 1/1 336 401 .. 1 87 [] 71.6 3.6e-20
CP000085_1371 1/1 242 308 .. 1 87 [] 67.8 4.2e-19
CP000085_1758 1/1 223 288 .. 1 87 [] 60.1 6.2e-17
CP000085_0373 1/1 241 307 .. 1 87 [] 59.2 1.2e-16
CP000085_1774 1/1 156 221 .. 1 87 [] 57.3 4e-16
CP000085_1183 1/1 210 276 .. 1 87 [] 56.0 9.1e-16
CP000085_1715 1/1 242 307 .. 1 87 [] 55.6 1.2e-15
CP000085_1002 1/1 586 654 .. 1 87 [] 46.5 4.4e-13
CP000085_1732 1/1 207 272 .. 1 87 [] 46.5 4.5e-13
CP000085_0899 1/1 231 296 .. 1 87 [] 45.3 9.5e-13
CP000085_0583 1/1 27 94 .. 1 87 [] 29.0 4e-08
CP000085_0498 1/1 143 206 .. 1 87 [] 28.4 6.2e-08

Alignments of top-scoring domains:
CP000085_0141: domain 1 of 1, from 471 to 536: score 91.9, E = 6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL+aI+g++elL++ + ls +q
CP000085_0 471 AKSTFLATMSHEIRTPLNAIIGNLELLRR---------SQLSNQQ-- 506

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l++++++++ ll++ind+Ldls+ e+g
CP000085_0 507 ----------SERLQVVESCSNALLHIINDILDLSKVESG 536

CP000085_0144: domain 1 of 1, from 336 to 401: score 71.6, E = 3.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+f+a +sHE+RTPL+aI +++lL + ++l++ +
CP000085_0 336 RKSRFIAVMSHEIRTPLNAIVSAIDLLSR---------AKLGPME-- 371

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +t+ +++ +l +++d+Ld+s++ a
CP000085_0 372 ----------KQLADTAVKASASLVGMLDDVLDISKLHAD 401

CP000085_1371: domain 1 of 1, from 242 to 308: score 67.8, E = 4.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f +nl+H++RTPLt +++ a+++l ++++++
CP000085_1 242 RLSQFSSNLAHDMRTPLTNLLAEAQVALS---------KPRTADE-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+ +e+ ++e +rl+r+i+d+L l+r ++
CP000085_1 278 ---------YRDVIESSIDEYQRLSRMIEDMLFLARSDNA 308

CP000085_1758: domain 1 of 1, from 223 to 288: score 60.1, E = 6.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+++HELRTP+ +++ ++lL++ ++s+++r
CP000085_1 223 LQRDFIADAAHELRTPIMGLSIQTQLLQR----------TASADER- 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+ + rl++L ++lL+l+r+e +
CP000085_1 259 ----------ARILAQIQAGTTRLSHLAEQLLTLARLEPE 288

CP000085_0373: domain 1 of 1, from 241 to 307: score 59.2, E = 1.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ e ++l+H++RTPLt +++ a+++l + +s ++
CP000085_0 241 RLKEYSSDLAHDMRTPLTNLLAEAQVALS---------QRRSVDE-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+ +e+ +e +rl r+++d+L l+r++
CP000085_0 277 ---------YRQVIESSVEEYQRLARMVDDMLFLARADGR 307

CP000085_1774: domain 1 of 1, from 156 to 221: score 57.3, E = 4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ ++sHELRTPL+ +r+++e L+e + s+ +
CP000085_1 156 AQRDLTNGISHELRTPLARVRFALESLRE----------PGSAAE-- 190

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ ++++i++++ l++Li+ L+++r+e
CP000085_1 191 ---------YQNAIDSIEQDVTELDELIDMSLTYARLEYS 221

CP000085_1183: domain 1 of 1, from 210 to 276: score 56.0, E = 9.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+ n+sHELRTPLt+I++ +elL+ d+ s++
CP000085_1 210 REKAFTGNVSHELRTPLTVIKTSCELLEH--------DASISAKS-- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ i+r+a+ + +L++ lL l+r ++
CP000085_1 247 ----------RARVRQIERAADGMKDLVDALLLLAREKSP 276

CP000085_1715: domain 1 of 1, from 242 to 307: score 55.6, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+L+TPL+a ++ +el+l+ ++ e +
CP000085_1 242 ARRRFFADAAHQLKTPLAAAQAGVELALR----------PAERERV- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++ ++++ +++++lL lsr+e+
CP000085_1 278 ----------NVHLRRVNGAVRQAAKIVQQLLSLSRLESD 307

CP000085_1002: domain 1 of 1, from 586 to 654: score 46.5, E = 4.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ +sH+L PL a+ g ++lL++++ + l++
CP000085_1 586 DLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQ------GQLDARA-- 624

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ + + a r+++Li+dlL +sr +
CP000085_1 625 ----------DEFIGHAVDGATRMQSLIDDLLSYSRVGRL 654

CP000085_1732: domain 1 of 1, from 207 to 272: score 46.5, E = 4.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++ ++sHEL+TPL+ + + + lL + ++e +
CP000085_1 207 QQREMMHGISHELKTPLARLEFGLALLAS----------PDGAERM- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e e ++r+++ l++L+ +lL++ r+e+g
CP000085_1 243 ----------QERQEALRRDVRELDELVTELLTIGRLEQG 272

CP000085_0899: domain 1 of 1, from 231 to 296: score 45.3, E = 9.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+an +HELRTP++a ++ ++ L + e++++ +
CP000085_0 231 AERSFTANSAHELRTPIAAALAQTQRLIA----------EAPSDPL- 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++++ +++ l+r ++l++l+++e g
CP000085_0 267 ----------RERAQRVEGALHTLSRVSEQLMQLAKAEDG 296

CP000085_0583: domain 1 of 1, from 27 to 94: score 29.0, E = 4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l+++sH+LR PL+a++ a +L++ + ++s++ +
CP000085_0 27 VRDHALSAASHDLRSPLNAMQSWAYVLER--------RLAASDDSV- 64

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ i+ +e+ +L++ + d r+e+
CP000085_0 65 ----------TRALDGIRIGIEQQTKLLEAVVDAPRAETR 94

CP000085_0498: domain 1 of 1, from 143 to 206: score 28.4, E = 6.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e l lsH++RTP t+I++++++ ++ ++ + +
CP000085_0 143 QRDEVLDFLSHDMRTPQTSILALLDVYRN---------EHGEMPPI- 179

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ a+r l+L + + l+r++++
CP000085_0 180 -------------LERIETHARRALALADGFIHLTRAQSE 206


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-15 1 0|=
-14 4 0|=
-13 21 1|*==
-12 75 53|=====*===
-11 198 279|====================== *
-10 360 518|======================================== *
-9 503 535|======================================================== *
-8 413 400|============================================*=
-7 300 252|===========================*======
-6 202 145|================*======
-5 128 79|========*======
-4 55 42|====*==
-3 41 22|==*==
-2 14 11|=*
-1 12 6|*=
0 7 3|*
1 2 1|*
2 3 0|=
> 3 19 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 167.4079
P(chi-square) = 4.028e-30

Total sequences searched: 2358

Whole sequence top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: