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Classification of phyla is from NCBI page
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2 accessions found for Burkholderia thailandensis E264  

Data for CP000086  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000086.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000086_2719 CDS_3180341-3179031 92.0 7.9e-26 1
CP000086_1018 CDS_1161773-1164880 70.3 1.1e-19 1
CP000086_0637 CDS_739898-738345 62.8 1.5e-17 1
CP000086_1816 CDS_2076391-2077578 61.8 2.9e-17 1
CP000086_3272 CDS_3803281-3804768 60.0 9.6e-17 1
CP000086_0670 CDS_773675-774991 55.0 2.4e-15 1
CP000086_2630 CDS_3055831-3053876 52.9 9.7e-15 1
CP000086_0038 CDS_37305-38684 51.4 2.5e-14 1
CP000086_0890 CDS_1019634-1020947 50.8 3.9e-14 1
CP000086_0630 CDS_731186-729378 50.6 4.4e-14 1
CP000086_1833 CDS_2106291-2103751 42.1 1.1e-11 1
CP000086_0133 CDS_163683-166046 41.3 1.9e-11 1
CP000086_2057 CDS_2371794-2370457 39.7 5.3e-11 1
CP000086_0398 CDS_444128-446161 34.4 1.7e-09 1
CP000086_0160 CDS_193123-194403 27.1 2e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000086_2719 1/1 206 272 .. 1 87 [] 92.0 7.9e-26
CP000086_1018 1/1 677 745 .. 1 87 [] 70.3 1.1e-19
CP000086_0637 1/1 282 347 .. 1 87 [] 62.8 1.5e-17
CP000086_1816 1/1 167 235 .. 1 87 [] 61.8 2.9e-17
CP000086_3272 1/1 240 305 .. 1 87 [] 60.0 9.6e-17
CP000086_0670 1/1 213 278 .. 1 87 [] 55.0 2.4e-15
CP000086_2630 1/1 45 110 .. 1 87 [] 52.9 9.7e-15
CP000086_0038 1/1 238 304 .. 1 87 [] 51.4 2.5e-14
CP000086_0890 1/1 219 277 .. 1 87 [] 50.8 3.9e-14
CP000086_0630 1/1 235 300 .. 1 87 [] 50.6 4.4e-14
CP000086_1833 1/1 597 667 .. 1 87 [] 42.1 1.1e-11
CP000086_0133 1/1 525 597 .. 1 87 [] 41.3 1.9e-11
CP000086_2057 1/1 227 286 .. 1 87 [] 39.7 5.3e-11
CP000086_0398 1/1 432 494 .. 1 81 [. 34.4 1.7e-09
CP000086_0160 1/1 201 270 .. 1 87 [] 27.1 2e-07

Alignments of top-scoring domains:
CP000086_2719: domain 1 of 1, from 206 to 272: score 92.0, E = 7.9e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHEL+TPLt+++g++e+++e +ls+++r
CP000086_2 206 MRRDFVANVSHELKTPLTVLSGFLETMRE---------LPLSDDER- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yle ++++a r+++++ dlL l+++e +
CP000086_2 243 ----------ARYLELMEQQASRMRHIVTDLLVLAKLEGE 272

CP000086_1018: domain 1 of 1, from 677 to 745: score 70.3, E = 1.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LRTPLtaI g++++L + a+ + s+ +
CP000086_1 677 LRNSLLSAISHDLRTPLTAIVGLSSMLAN------ARGGGSSARE-- 715

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++e+i++ea r+ ++ +lLd++r++ag
CP000086_1 716 ----------DELVESIHDEALRMTGIVTNLLDMARLQAG 745

CP000086_0637: domain 1 of 1, from 282 to 347: score 62.8, E = 1.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++H+++TPL+++r+ ae +l+ +e +++
CP000086_0 282 LQKRFIADAAHQMKTPLAGLRTQAEFALR---------HEVPDDV-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le i ++ + rL+ +lL l+r+e+
CP000086_0 318 ----------ARSLEQIATSSGQAARLVTQLLALARAENR 347

CP000086_1816: domain 1 of 1, from 167 to 235: score 61.8, E = 2.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++nl+HE+++PL +Irg+a+lL+ el +e+ +++
CP000086_1 167 VNKQLIRNLAHEIKNPLGGIRGAAQLLEFEL-------GERERDEL- 205

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+++i++e++rl+ L+++lL+ r +
CP000086_1 206 ----------REYTQVIIKESDRLQTLVDRLLEPHRHPHI 235

CP000086_3272: domain 1 of 1, from 240 to 305: score 60.0, E = 9.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+LRTPLtaI+++ae + +++++q+
CP000086_3 240 AQRKFIADAAHQLRTPLTAIKLHAEQAAV----------ARDPQQA- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++++a+r rL n+lL l+r+e g
CP000086_3 276 ----------LTAVRELRSAADRAVRLSNQLLSLARAEPG 305

CP000086_0670: domain 1 of 1, from 213 to 278: score 55.0, E = 2.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+a++ a+l + ++++ r
CP000086_0 213 TQKAFVADAAHELRTPLAAVQIQAQLVAR----------AQDDASR- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++ +++ + r rL ++lL l+r+e g
CP000086_0 249 ----------REAIVDLQSGVTRATRLAEQLLALARAEPG 278

CP000086_2630: domain 1 of 1, from 45 to 110: score 52.9, E = 9.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + la++sHELR P++++++++el + + l +eq
CP000086_2 45 ASRGSLATASHELRAPVNGMLALVELVRQ---------GLLAPEQ-- 80

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ +++++++l r +nd+Ld + ieag
CP000086_2 81 ----------QRLLSLVQDSGQSLARVLNDILDHASIEAG 110

CP000086_0038: domain 1 of 1, from 238 to 304: score 51.4, E = 2.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+++H+LRTP+++I + ++ ++ e ++ +
CP000086_0 238 TQRRFIADAAHQLRTPIAVIDTQIQCARQ---------REDGDAAL- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l +++r+++r+ + + lL l+ +ea
CP000086_0 275 ----------AALLASMQRSSRRMADVTDKLLLLAHAEAA 304

CP000086_0890: domain 1 of 1, from 219 to 277: score 50.8, E = 3.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la+++H+LRTPL+ +r+ ae++ +
CP000086_0 219 DRAVMLAGVAHDLRTPLARMRLRAEMMDD------------------ 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + + r+++++ ++++++L ++ +
CP000086_0 248 ----------ARLRDGVVRDVDSMTHIVDQFLVFAHGDVD 277

CP000086_0630: domain 1 of 1, from 235 to 300: score 50.6, E = 4.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl ++sHELRTPL aI g +e+Ll+ ++s+
CP000086_0 235 AKNAFLGMVSHELRTPLQAICGSIEVLLA---------RPQSDAN-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++++a +l++++ dl d+ ++++
CP000086_0 271 ----------MKTIKRLQNSAASLEAQVKDLTDYIKLRST 300

CP000086_1833: domain 1 of 1, from 597 to 667: score 42.1, E = 1.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++++HEL++PL+aI y++ l+ l +++ +s+e++
CP000086_1 597 TMGEMASSIAHELNQPLAAINNYCSGTLA-----LVKSGRASPETL- 637

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +le+ ++a r ++ +++++ + ++
CP000086_1 638 ----------APALEKTAQQALRAGMIVKRIREFVKRSEP 667

CP000086_0133: domain 1 of 1, from 525 to 597: score 41.3, E = 1.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+++l +++ls ++ +
CP000086_0 525 AWGEVARRLAHEIKNPLTPIQLSAERLQMKL------SDKLSQPD-A 564

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ L ++ ti +++ + r+++d++d++r
CP000086_0 565 DVL-------KRGATTIVNQVAAMKRMVDDFRDYARTPPA 597

CP000086_2057: domain 1 of 1, from 227 to 286: score 39.7, E = 5.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPL+ +r+ +e+ +
CP000086_2 227 DRALMLAGISHDLRTPLARLRLETEMSPSD----------------- 256

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +++e+++r+i + d++r +
CP000086_2 257 ----------QATKDAMVDDIEQMDRIIAAFIDYARPAQR 286

CP000086_0398: domain 1 of 1, from 432 to 494: score 34.4, E = 1.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a++ HEL++PL+a+r +++ + +++e+ ++
CP000086_0 432 ALGQMAAGITHELNQPLAALRSFSDNTRV--------LLDRGEQAAA 470

peLRledpeyreyletilreaerllrLindlLdl<-*
re le i +er+ ++ n+l +
CP000086_0 471 ----------RENLEAIAALTERMGKITNQLKLF 494

CP000086_0160: domain 1 of 1, from 201 to 270: score 27.1, E = 2e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ +a+++HE+ TPL++I +++e L+e a +t+++
CP000086_0 201 ALGVQAATVAHEMGTPLSTIAMLTEELRE------AARTDAGLAR-- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y l++++++ ++ + + +l+ + +
CP000086_0 240 ---------YDADLKVLEEQMSQCTSALARLRSRASERPS 270


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 5 0|=
-13 31 2|*==
-12 109 74|======*===
-11 267 388|========================= *
-10 517 720|=============================================== *
-9 635 743|==========================================================*
-8 610 556|==================================================*=====
-7 436 351|===============================*========
-6 284 202|==================*=======
-5 165 110|=========*=====
-4 97 59|=====*===
-3 58 31|==*===
-2 28 16|=*=
-1 5 8|*
0 5 4|*
1 2 2|*
2 2 1|*
> 3 20 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 268.5107
P(chi-square) = 0

Total sequences searched: 3276

Whole sequence top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 15
Satisfying E cutoff: 15
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: