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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Rickettsia bellii RML369-C  

Data for CP000087  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000087.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000087_0228 CDS_271839-270343 88.0 4.6e-25 1
CP000087_0342 CDS_381629-384379 74.8 2.6e-21 1
CP000087_0744 CDS_823330-824094 58.4 1.1e-16 1
CP000087_0470 CDS_532405-534237 50.8 1.7e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000087_0228 1/1 269 334 .. 1 87 [] 88.0 4.6e-25
CP000087_0342 1/1 694 762 .. 1 87 [] 74.8 2.6e-21
CP000087_0744 1/1 42 100 .. 1 87 [] 58.4 1.1e-16
CP000087_0470 1/1 378 448 .. 1 87 [] 50.8 1.7e-14

Alignments of top-scoring domains:
CP000087_0228: domain 1 of 1, from 269 to 334: score 88.0, E = 4.6e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+an+sHELRTPL+aI+g++e+L ++ +e+
CP000087_0 269 SNTKFFANISHELRTPLNAIIGFSEILMS---------EKDPEKS-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y++ i +++++ll++ind+Ldls++ a
CP000087_0 305 ----------RNYIKDINDAGKHLLSMINDILDLSKASAD 334

CP000087_0342: domain 1 of 1, from 694 to 762: score 74.8, E = 2.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k efl+n+ HE++TPLt+I+ + e+L +++ + s++qr
CP000087_0 694 LKHEFLRNINHEINTPLTGIISLGETLWANY-------DRFSDDQR- 732

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++e+i +++ rl++Li+++Ld+s++ +
CP000087_0 733 ----------RNAVEIIAKSSIRLNSLISNILDFSKLSSL 762

CP000087_0744: domain 1 of 1, from 42 to 100: score 58.4, E = 1.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPLt +++ +el+ e
CP000087_0 42 KRTTMLAMISHDLRTPLTRMKLQLELMDE------------------ 70

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++ +++++ ++++in Ld++r e+
CP000087_0 71 ----------NEETDGLKQDILTMQQMINSYLDFARGESA 100

CP000087_0470: domain 1 of 1, from 378 to 448: score 50.8, E = 1.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a s+ + ++HE+++PLt I++++e Ll+ + s+e +
CP000087_0 378 AWSDVAKKVAHEIKNPLTPILLASERLLK----------KFSPEIK- 413

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e e++ yl+ i+r ++ + ++++++ ++r+ a+
CP000087_0 414 -----ERAEFENYLKMIIRHTNDIKNIVSEFVLFARLPAP 448


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-14 2 0|=
-13 24 1|*====
-12 80 32|======*=========
-11 180 169|=================================*==
-10 289 314|==========================================================*
-9 254 324|=================================================== *
-8 217 242|============================================ *
-7 165 153|==============================*==
-6 96 88|=================*==
-5 48 48|=========*
-4 29 25|====*=
-3 16 13|==*=
-2 8 7|=*
-1 5 3|*
0 4 1|*
1 1 1|*
2 3 0|=
3 2 0|=
> 4 6 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 91.9048
P(chi-square) = 2.243e-15

Total sequences searched: 1429

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: