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Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Thermobifida fusca YX  

Data for CP000088  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000088.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000088_0284 CDS_323382-319162 89.3 4.6e-25 1
CP000088_2488 CDS_2941429-2939690 75.5 3.6e-21 1
CP000088_0254 CDS_288229-286805 75.1 4.7e-21 1
CP000088_2902 CDS_3423872-3425005 73.3 1.5e-20 1
CP000088_1327 CDS_1539620-1541047 68.9 2.6e-19 1
CP000088_2055 CDS_2416964-2415888 60.4 6.7e-17 1
CP000088_0342 CDS_386990-388429 56.9 6.9e-16 1
CP000088_1933 CDS_2270223-2268913 48.8 1.3e-13 1
CP000088_2336 CDS_2758927-2757266 48.3 1.8e-13 1
CP000088_2543 CDS_3004367-3005650 43.6 3.8e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000088_0284 1/1 957 1025 .. 1 87 [] 89.3 4.6e-25
CP000088_2488 1/1 311 378 .. 1 87 [] 75.5 3.6e-21
CP000088_0254 1/1 253 319 .. 1 87 [] 75.1 4.7e-21
CP000088_2902 1/1 137 203 .. 1 87 [] 73.3 1.5e-20
CP000088_1327 1/1 247 310 .. 1 87 [] 68.9 2.6e-19
CP000088_2055 1/1 136 204 .. 1 87 [] 60.4 6.7e-17
CP000088_0342 1/1 261 328 .. 1 87 [] 56.9 6.9e-16
CP000088_1933 1/1 207 273 .. 1 87 [] 48.8 1.3e-13
CP000088_2336 1/1 306 374 .. 1 87 [] 48.3 1.8e-13
CP000088_2543 1/1 208 274 .. 1 87 [] 43.6 3.8e-12

Alignments of top-scoring domains:
CP000088_0284: domain 1 of 1, from 957 to 1025: score 89.3, E = 4.6e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++ +a lL ++++ +l+++q
CP000088_0 957 YKSEFLANMSHELRTPLNSLLILARLLADNSE------KNLTPKQ-- 995

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +ti++++ ll+Lin++Ldls+ eag
CP000088_0 996 ----------VEFAQTIYKAGSDLLQLINEILDLSKVEAG 1025

CP000088_2488: domain 1 of 1, from 311 to 378: score 75.5, E = 3.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt+Ir++ +lL e +++ ++
CP000088_2 311 VQRQFVSDVSHELRTPLTTIRMAGDLLFE-------ERDSFDPTV-- 348

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +e +++++er ++L+ndlL++sr +ag
CP000088_2 349 ----------RRSVELLQSQLERFEELLNDLLEISRHDAG 378

CP000088_0254: domain 1 of 1, from 253 to 319: score 75.1, E = 4.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a++sHELRTPLt+I+gyael + ++ ++ ++
CP000088_0 253 RVRDFAADASHELRTPLTTILGYAELYRQ---------GAIPDAEL- 289

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ ++++ ea r+++L+ +lL+l+r++
CP000088_0 290 ----------PEAMRRVEAEATRMSKLVGELLELARLDRT 319

CP000088_2902: domain 1 of 1, from 137 to 203: score 73.3, E = 1.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ a++++ae++ + + +++ +
CP000088_2 137 VRRDFVANISHELKTPVGALSLLAETIND---------ASDDPDAV- 173

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ +++++ea+rl +Li+dl +lsri+
CP000088_2 174 ----------RRFASRMKHEADRLTSLIQDLITLSRIQGA 203

CP000088_1327: domain 1 of 1, from 247 to 310: score 68.9, E = 2.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ ++sHELRTP+t +rg++el+ + ++++r
CP000088_1 247 TQRRFVDDASHELRTPITIVRGHLELMGD------------DPDER- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++ + +e++r+ r+++dlL l++++ +
CP000088_1 281 ----------REVVRLVTDELDRMARIVEDLLVLAQAQRP 310

CP000088_2055: domain 1 of 1, from 136 to 204: score 60.4, E = 6.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++++HELR PLt+++g++ ++l+ +++ l++ q+
CP000088_2 136 SSANLVSMVAHELRSPLTSVKGFIATMLA-------KWHRLTDTQK- 174

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+let+ +a+r rLi +lLd sri++g
CP000088_2 175 ----------IFMLETVNADADRVTRLITELLDVSRIQSG 204

CP000088_0342: domain 1 of 1, from 261 to 328: score 56.9, E = 6.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ n+sHELRTPLt++r+++++++ + ls+e +
CP000088_0 261 EQRRLVQNASHELRTPLTSLRTNVSVMKQ--------FDRLSPEAQ- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ ++ e++ l +L+n+l l+ +
CP000088_0 299 ----------QRLVDDLQGETRELTDLVNELVSLATETYQ 328

CP000088_1933: domain 1 of 1, from 207 to 273: score 48.8, E = 1.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPL+ r+++e++ d+e+s++
CP000088_1 207 GQRRFVANASHELRTPLAINRTLLEVAVS--------DPEASPDL-- 243

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +t+l+ r +rLi+ lL l++ + +
CP000088_1 244 ----------KTIARTLLETNARHERLIDGLLFLAKSDRE 273

CP000088_2336: domain 1 of 1, from 306 to 374: score 48.3, E = 1.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L PL + +++lL++++ ++l+e
CP000088_2 306 ELEQFAYVASHDLQEPLRKVASFCQLLQRRYH------GKLDERA-- 344

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ + + a+r++ LindlL +sr +
CP000088_2 345 ----------DAYIDFAVEGAKRMQVLINDLLAFSRVGRT 374

CP000088_2543: domain 1 of 1, from 208 to 274: score 43.6, E = 3.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+ ++sH+LRTPLta+++ +e + + ++++++
CP000088_2 208 TERHFATDASHQLRTPLTALSMRLEEIIA--------EADKPDVV-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e e +l ++erl ++++ lL +r ++
CP000088_2 245 ----------CEEGEAALAQTERLVDIVESLLGRARRTQN 274


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 2 0|=
-13 22 2|*=
-12 119 71|======*====
-11 275 368|========================= *
-10 528 683|================================================ *
-9 591 706|====================================================== *
-8 540 528|===============================================*==
-7 421 333|==============================*========
-6 247 191|=================*=====
-5 143 105|=========*===
-4 89 56|=====*===
-3 51 29|==*==
-2 32 15|=*=
-1 17 8|*=
0 11 4|*
1 6 2|*
2 3 1|*
3 1 0|=
> 4 12 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 224.2701
P(chi-square) = 1.259e-311

Total sequences searched: 3110

Whole sequence top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: