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Classification of phyla is from NCBI page
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76 projects found  

4 accessions found for Ralstonia eutropha JMP134  

Data for CP000090  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000090.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000090_2143 CDS_2385326-2383992 87.2 2e-24 1
CP000090_2270 CDS_2525938-2523083 73.7 1.3e-20 1
CP000090_2470 CDS_2731002-2732399 68.0 5.5e-19 1
CP000090_0525 CDS_572535-570982 67.5 7.5e-19 1
CP000090_2037 CDS_2259282-2258101 64.9 4e-18 1
CP000090_1797 CDS_1985265-1983862 62.8 1.6e-17 1
CP000090_1326 CDS_1436540-1437898 61.1 4.7e-17 1
CP000090_3366 CDS_3716659-3718287 60.7 6.4e-17 1
CP000090_0184 CDS_209816-208371 58.6 2.5e-16 1
CP000090_2084 CDS_2310306-2311724 54.1 4.7e-15 1
CP000090_2722 CDS_3012271-3010436 53.5 6.7e-15 1
CP000090_2922 CDS_3231562-3229445 51.9 1.9e-14 1
CP000090_0574 CDS_626638-627927 51.7 2.2e-14 1
CP000090_3412 CDS_3777293-3775800 51.1 3.3e-14 1
CP000090_3379 CDS_3734788-3732350 47.3 3.8e-13 1
CP000090_1355 CDS_1472416-1471067 43.1 6e-12 1
CP000090_2792 CDS_3085188-3084055 39.8 5.1e-11 1
CP000090_3301 CDS_3634805-3633729 39.7 5.7e-11 1
CP000090_1290 CDS_1394681-1392066 32.7 5.2e-09 1
CP000090_2647 CDS_2930458-2932374 32.1 7.7e-09 1
CP000090_2793 CDS_3086527-3085196 31.6 1.1e-08 1
CP000090_0276 CDS_309465-307486 27.5 1.6e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000090_2143 1/1 206 272 .. 1 87 [] 87.2 2e-24
CP000090_2270 1/1 710 777 .. 1 87 [] 73.7 1.3e-20
CP000090_2470 1/1 237 303 .. 1 87 [] 68.0 5.5e-19
CP000090_0525 1/1 284 349 .. 1 87 [] 67.5 7.5e-19
CP000090_2037 1/1 169 234 .. 1 87 [] 64.9 4e-18
CP000090_1797 1/1 243 309 .. 1 87 [] 62.8 1.6e-17
CP000090_1326 1/1 230 295 .. 1 87 [] 61.1 4.7e-17
CP000090_3366 1/1 282 347 .. 1 87 [] 60.7 6.4e-17
CP000090_0184 1/1 257 322 .. 1 87 [] 58.6 2.5e-16
CP000090_2084 1/1 245 310 .. 1 87 [] 54.1 4.7e-15
CP000090_2722 1/1 245 310 .. 1 87 [] 53.5 6.7e-15
CP000090_2922 1/1 429 502 .. 1 87 [] 51.9 1.9e-14
CP000090_0574 1/1 221 279 .. 1 87 [] 51.7 2.2e-14
CP000090_3412 1/1 258 331 .. 1 87 [] 51.1 3.3e-14
CP000090_3379 1/1 570 642 .. 1 87 [] 47.3 3.8e-13
CP000090_1355 1/1 236 295 .. 1 87 [] 43.1 6e-12
CP000090_2792 1/1 141 213 .. 1 87 [] 39.8 5.1e-11
CP000090_3301 1/1 153 211 .. 1 87 [] 39.7 5.7e-11
CP000090_1290 1/1 637 707 .. 1 87 [] 32.7 5.2e-09
CP000090_2647 1/1 412 480 .. 1 87 [] 32.1 7.7e-09
CP000090_2793 1/1 221 289 .. 1 87 [] 31.6 1.1e-08
CP000090_0276 1/1 426 489 .. 1 82 [. 27.5 1.6e-07

Alignments of top-scoring domains:
CP000090_2143: domain 1 of 1, from 206 to 272: score 87.2, E = 2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHEL+TPLt++ g++e+ ++ + see+r
CP000090_2 206 MRRDFVANVSHELKTPLTVLTGFLETVRD---------LPVSEEDR- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ +l ++ r++++++dlL l+++e+
CP000090_2 243 ----------QRYVDMMLVQSMRMQSIVEDLLALAKLESD 272

CP000090_2270: domain 1 of 1, from 710 to 777: score 73.7, E = 1.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +la++sH+LRTPLt+++g+ae+L++ gd++l +
CP000090_2 710 LRSSLLAAVSHDLRTPLTSLIGMAETLQR-------GDPPLAPRV-- 747

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ ++++a+r++ ++ +lLd++r++
CP000090_2 748 ----------ADTVSAMRDQARRMSTMVVNLLDMARLQGR 777

CP000090_2470: domain 1 of 1, from 237 to 303: score 68.0, E = 5.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f ++++HELRTPLt +++ +++ l +++ +e+
CP000090_2 237 RLSDFSSDIAHELRTPLTNLMTQTHVVLS---------QPRAAEK-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+ l + +e++rl+r+++d+L l+++e+g
CP000090_2 273 ---------YRDVLASNAEELQRLSRMVSDMLYLAQMEHG 303

CP000090_0525: domain 1 of 1, from 284 to 349: score 67.5, E = 7.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++H+++TPL+++r+ ael+++ e+s+e++
CP000090_0 284 TQKRFIADAAHQMKTPLAGLRMQAELAQR----------EQSPEEL- 319

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l i ++er +L+ +lL l+r+e+
CP000090_0 320 ----------RRSLAQIAGSSERTAHLVTQLLSLARMENL 349

CP000090_2037: domain 1 of 1, from 169 to 234: score 64.9, E = 4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e+++nl+HE+++PL +Irg+a+lL+ el+e +
CP000090_2 169 ANKELIRNLAHEIKNPLGGIRGAAQLLEF----------ELPERAL- 204

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+++i++e++rl+ L+++lL+ r +
CP000090_2 205 ----------REYTQVIIKESDRLQTLVDRLLEPHRHPHI 234

CP000090_1797: domain 1 of 1, from 243 to 309: score 62.8, E = 1.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f a+l+H++RTP+ ++g ++++l+ +++s+++
CP000090_1 243 RLSQFSADLAHDFRTPIGNLLGQTQVALA---------SDRSADE-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +l + ++e erl r+i+++L l+r+++
CP000090_1 279 ---------YQALLASNIEEYERLARMIENMLFLARADNA 309

CP000090_1326: domain 1 of 1, from 230 to 295: score 61.1, E = 4.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++a+++HE+RTPL+a+++ e++++ ++ +e
CP000090_1 230 HERRLTADAAHEMRTPLAALKAQWEIARR---------SPDESER-- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ ++r++rL+++lL++sr+e
CP000090_1 266 ----------ARARANVESGIDRMSRLVSQLLTMSRLEDA 295

CP000090_3366: domain 1 of 1, from 282 to 347: score 60.7, E = 6.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+LRTPLta++++a+ + e ++ +
CP000090_3 282 AQRKFIADAAHQLRTPLTAVKLHADRAME---------ADSLDVA-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l+ ++ +a+r rL n+lL l+r+e g
CP000090_3 318 ----------RHALRELQTAADRAVRLSNQLLSLARAEPG 347

CP000090_0184: domain 1 of 1, from 257 to 322: score 58.6, E = 2.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +l HE++ PL+aI+g+aelL+e ++++ +r
CP000090_0 257 YVEHYIHTLTHEMKSPLAAISGAAELLQE----------DMPPADR- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ i+ +++rl ++i+ lL l+ e+
CP000090_0 293 ----------QRFVANIRGQSQRLAQMIRKLLALAAVEQR 322

CP000090_2084: domain 1 of 1, from 245 to 310: score 54.1, E = 4.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +f+a+++H+L+TPL++I++ +el+l+ ++ +e
CP000090_2 245 ARKRFFADAAHQLKTPLAVIQAESELALR---------EPDGERV-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + ++ +++ + +++lL lsr++
CP000090_2 281 ----------REHMRLLHGTVRHAAKGVQQLLSLSRLDPD 310

CP000090_2722: domain 1 of 1, from 245 to 310: score 53.5, E = 6.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sH+LR+P++a+ +++e+L++ ++s
CP000090_2 245 EKSRFLAAASHDLRQPVHALVMLVEALRA---------RNQSTVL-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++e + ++ ++ L + lLdls++e
CP000090_2 281 ----------HPLVEQVAAGTQTIDLLFRSLLDLSKLEGR 310

CP000090_2922: domain 1 of 1, from 429 to 502: score 51.9, E = 1.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
a+++++a+++H++R+PL+aI+ ++elL +++ g + s+ +
CP000090_2 429 AMGRLVASVAHQIRNPLAAISQASELLGDGA--SmGSGGGVESDVD- 472

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i++ ++rl++ ++d+L++sr
CP000090_2 473 -----------ARLLRIIHDNVRRLDQVVSDVLQISRRPRT 502

CP000090_0574: domain 1 of 1, from 221 to 279: score 51.7, E = 2.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la+++H+L+TPL+ +r+ ae+L +
CP000090_0 221 ERNTMLAGIAHDLKTPLARLRLRAEMLSD------------------ 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + r++e+++++++++L +++ ++
CP000090_0 250 ----------PKAAAGVTRDVESMSAIVEQFLSFAQSSEP 279

CP000090_3412: domain 1 of 1, from 258 to 331: score 51.1, E = 3.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +f+a+++H+LRTPL+ +++ ae ++++l ++ +++ +
CP000090_3 258 AQAQFIADAAHQLRTPLAILKTQAEFAQRQLC------ADGDDPASR 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e++ i ++e+ rL n+lL l+r ++
CP000090_3 299 QAA-------GEAVGGIVTQLEQAARLTNQLLALARVRQH 331

CP000090_3379: domain 1 of 1, from 570 to 642: score 47.3, E = 3.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+++l +++ +++++e +
CP000090_3 570 AWGEVARRLAHEIKNPLTPIQLSAERLQMKL---SPKLEDKDAEVL- 612

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ti +++ + r+++d++d++r
CP000090_3 613 ----------KRGAATIVNQVAAMKRMVDDFRDYARTPPA 642

CP000090_1355: domain 1 of 1, from 236 to 295: score 43.1, E = 6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPLt +r+ +e+ ++++ +
CP000090_1 236 DRAVMLAGISHDLRTPLTRLRLETEM------------SPADNAT-- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++ ++e+++++i ++L ++r +
CP000090_1 269 -------------REAMITDIEQMDAIIGQFLNYARPPLE 295

CP000090_2792: domain 1 of 1, from 141 to 213: score 39.8, E = 5.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e la l+HEL+TPL+aI +a ++ ++ +e s++ +
CP000090_2 141 AIDETLAFLAHELNTPLAAIANFARGIEGRVA------AEYSAQRQ- 180

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ ++ +++ a+++l+ ++ +L+ r ag
CP000090_2 181 -------GEIGQAATAMHDNAQYCLAVLSSFLQSVRSSAG 213

CP000090_3301: domain 1 of 1, from 153 to 211: score 39.7, E = 5.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+fla++sH+LRTPLt +++ +e + +
CP000090_3 153 QQSRFLAAVSHDLRTPLTRMSLRLEGIAD------------------ 181

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++ ++ Li+ L + r + +
CP000090_3 182 ----------NPVQYRLRQDLAEMNGLIDSTLYYLRDRDE 211

CP000090_1290: domain 1 of 1, from 637 to 707: score 32.7, E = 5.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PL+aI y+ + ++l +++ ++e+++
CP000090_1 637 TMGEMASSLAHELNQPLAAINNYCMGAVARL-----HSGRSTPEDLI 678

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p le+ +a r +i++++ + + ++
CP000090_1 679 PV-----------LEKTSAQAVRAGTIISRIRGFVKRSQP 707

CP000090_2647: domain 1 of 1, from 412 to 480: score 32.1, E = 7.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +++ +++HEL++PL+a+r+ + ++l + + e++
CP000090_2 412 AVGQMSTGIAHELNQPLAALRTISGNTGKFL-------ERGDYETV- 450

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l ti+ +er+ r+ l ++r +
CP000090_2 451 ----------RANLGTIIGLVERMGRITGALKSFARKPGN 480

CP000090_2793: domain 1 of 1, from 221 to 289: score 31.6, E = 1.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++a+l HE ++P++ ++++e++ e + +++ + +
CP000090_2 221 AIGTLAAGLLHEVNNPVNFCLMAIEVAME-------EPQAKENPSL- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l +++ +r++++++dl +++ g
CP000090_2 260 ----------EECLVDAKQGMQRIQHIVSDLKTFAYRKPG 289

CP000090_0276: domain 1 of 1, from 426 to 489: score 27.5, E = 1.6e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a++ HEL++PL+a+r++++ + l++++ l + +
CP000090_0 426 ALGQMAAGITHELNQPLAALRTFSDNTRV-----LLERGQLAAAE-- 465

peLRledpeyreyletilreaerllrLindlLdls<-*
l+ i + +er+ ++ +l ++
CP000090_0 466 -----------GNLSAIADLTERMGKITGQLKLFA 489


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-14 7 0|=
-13 30 2|*==
-12 123 78|======*====
-11 282 407|======================== *
-10 563 756|=============================================== *
-9 670 780|======================================================== *
-8 609 584|================================================*==
-7 487 368|==============================*==========
-6 299 212|=================*=======
-5 162 116|=========*====
-4 79 62|=====*=
-3 46 32|==*=
-2 20 17|=*
-1 16 9|*=
0 9 4|*
1 7 2|*
2 2 1|*
3 1 0|=
4 2 0|=
> 5 25 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 237.1962
P(chi-square) = 2.652e-314

Total sequences searched: 3439

Whole sequence top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: