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Classification of phyla is from NCBI page
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76 projects found  

4 accessions found for Ralstonia eutropha JMP134  

Data for CP000091  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000091.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000091_1068 CDS_1213809-1217267 125.0 2.6e-35 2
CP000091_0604 CDS_707306-711160 98.3 9.4e-28 1
CP000091_1870 CDS_2117242-2120424 98.2 1e-27 1
CP000091_1570 CDS_1778257-1780824 88.8 4.7e-25 1
CP000091_2366 CDS_2680169-2683015 88.0 8e-25 1
CP000091_1001 CDS_1138786-1140825 86.4 2.2e-24 1
CP000091_0203 CDS_248920-245531 80.6 9.8e-23 1
CP000091_1501 CDS_1699977-1700876 73.4 1.1e-20 1
CP000091_1608 CDS_1821241-1823220 73.2 1.3e-20 1
CP000091_1000 CDS_1138723-1136687 72.6 1.9e-20 1
CP000091_1849 CDS_2091566-2090232 63.0 9.5e-18 1
CP000091_0647 CDS_754611-752692 63.0 9.7e-18 1
CP000091_1442 CDS_1644406-1640252 62.6 1.3e-17 1
CP000091_0497 CDS_595413-596855 57.0 4.9e-16 1
CP000091_1695 CDS_1908936-1910291 48.3 1.4e-13 1
CP000091_1502 CDS_1700866-1702848 40.2 2.8e-11 1
CP000091_1131 CDS_1287617-1288807 40.1 3e-11 1
CP000091_0899 CDS_1024155-1025276 37.8 1.3e-10 1
CP000091_1468 CDS_1667720-1665321 31.8 6.6e-09 1
CP000091_0446 CDS_542011-543318 28.5 5.9e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000091_0604 1/1 531 596 .. 1 87 [] 98.3 9.4e-28
CP000091_1870 1/1 511 576 .. 1 87 [] 98.2 1e-27
CP000091_1570 1/1 229 294 .. 1 87 [] 88.8 4.7e-25
CP000091_2366 1/1 388 453 .. 1 87 [] 88.0 8e-25
CP000091_1001 1/1 253 319 .. 1 87 [] 86.4 2.2e-24
CP000091_0203 1/1 524 589 .. 1 87 [] 80.6 9.8e-23
CP000091_1501 1/1 59 127 .. 1 87 [] 73.4 1.1e-20
CP000091_1608 1/1 278 344 .. 1 87 [] 73.2 1.3e-20
CP000091_1000 1/1 304 369 .. 1 87 [] 72.6 1.9e-20
CP000091_1068 1/2 353 421 .. 1 87 [] 69.1 1.8e-19
CP000091_1849 1/1 223 288 .. 1 87 [] 63.0 9.5e-18
CP000091_0647 1/1 274 340 .. 1 87 [] 63.0 9.7e-18
CP000091_1442 1/1 1020 1088 .. 1 87 [] 62.6 1.3e-17
CP000091_0497 1/1 245 311 .. 1 87 [] 57.0 4.9e-16
CP000091_1068 2/2 783 849 .. 1 87 [] 55.9 9.9e-16
CP000091_1695 1/1 228 293 .. 1 87 [] 48.3 1.4e-13
CP000091_1502 1/1 286 351 .. 1 87 [] 40.2 2.8e-11
CP000091_1131 1/1 184 242 .. 1 87 [] 40.1 3e-11
CP000091_0899 1/1 151 216 .. 1 87 [] 37.8 1.3e-10
CP000091_1468 1/1 576 641 .. 1 87 [] 31.8 6.6e-09
CP000091_0446 1/1 231 289 .. 1 87 [] 28.5 5.9e-08

Alignments of top-scoring domains:
CP000091_0604: domain 1 of 1, from 531 to 596: score 98.3, E = 9.4e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak flan+sHE+RTP++a++g+a+l+l t l+++q
CP000091_0 531 AKASFLANMSHEIRTPMNAVIGMAHLALS---------TQLDPQQ-- 566

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+e+i+r++++ll ++nd+Ldls+ieag
CP000091_0 567 ----------RDYVEKIQRSGQHLLGILNDILDLSKIEAG 596

CP000091_1870: domain 1 of 1, from 511 to 576: score 98.2, E = 1e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTPL++I+g+++l+ ++ s q
CP000091_1 511 AKSQFLANMSHEIRTPLNGISGMTHLAIG---------EPDSGRQ-- 546

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl +i+++ ++l+r++nd+Ld+s++eag
CP000091_1 547 ----------GQYLARIEESCQHLQRIVNDILDFSKMEAG 576

CP000091_1570: domain 1 of 1, from 229 to 294: score 88.8, E = 4.7e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++++g++e+L + t+ls++q
CP000091_1 229 AKSAFLAMISHEIRTPMNGVIGMIEVLTR---------TTLSADQ-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++ t++++a ll++i+d+Ld+s+iea
CP000091_1 265 ----------REMVATVRESAAALLNIIDDILDFSKIEAD 294

CP000091_2366: domain 1 of 1, from 388 to 453: score 88.0, E = 8e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fla++sHE+RTP+++I+g++elL++ t+l++ q
CP000091_2 388 AKEGFLAMMSHEIRTPMNGILGLVELLRN---------TALTPAQ-- 423

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++++++ l ++++d+Ld++rieag
CP000091_2 424 ----------HRMLTLAHESGHALAQILDDILDYARIEAG 453

CP000091_1001: domain 1 of 1, from 253 to 319: score 86.4, E = 2.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP++a+ g++el+l+ ++e+++++
CP000091_1 253 AKSTFLASVSHEIRTPMNAVAGMIELALK--------RPEMPSDE-- 289

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+t++++a ll+Li+d+Ldls++eag
CP000091_1 290 ----------RRMLSTAHDSALALLALIDDILDLSKMEAG 319

CP000091_0203: domain 1 of 1, from 524 to 589: score 80.6, E = 9.8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s f+a++sHE+RTPL+a++g++elL + ++ e +
CP000091_0 524 ARSSFFASMSHEIRTPLNALIGNLELLAR---------SPGLEGH-- 559

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+++ +ae l+r++nd+Ld+s+i+ag
CP000091_0 560 ----------AQRLHVLGTAAEGLRRIVNDILDFSKIDAG 589

CP000091_1501: domain 1 of 1, from 59 to 127: score 73.4, E = 1.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fla++sHE+RTP+ aI+ + lL +++d ++l++eq
CP000091_1 59 LKSRFLAYMSHEFRTPIVAIQSITRLLIDRVD------GPLTPEQ-- 97

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ +++ a ++ndlLdl+r+eag
CP000091_1 98 ----------EKQVRFVRDTAAEFAGMVNDLLDLARLEAG 127

CP000091_1608: domain 1 of 1, from 278 to 344: score 73.2, E = 1.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla+l+HELR+PL+ +r +++lL+ ++++++
CP000091_1 278 RKEQFLAMLAHELRNPLAPMRSAVDLLQQ--------PQPAPADA-- 314

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i r++++l++L++dlLd+sr +g
CP000091_1 315 ----------FRARDVIGRQLRHLSQLVDDLLDISRFNQG 344

CP000091_1000: domain 1 of 1, from 304 to 369: score 72.6, E = 1.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak +fla++ HE+RTPL+a++g++elL+ +++s++q
CP000091_1 304 AKARFLATMTHEIRTPLAAVIGALELLRG---------SPMSAQQ-- 339

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++++a+ l ++++ +Ld+sr+eag
CP000091_1 340 ----------ASEVALADNAARLLMEILDGILDYSRLEAG 369

CP000091_1068: domain 1 of 2, from 353 to 421: score 69.1, E = 1.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f++n+sHE+RTPLt ++g +e Ll+ +++els+
CP000091_1 353 AKTTFFSNVSHEFRTPLTLMLGPVEDLLM------RRSDELSAAA-- 391

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l ++ r + rllrL+n lLd+srieag
CP000091_1 392 ----------KEDLAVVGRNGLRLLRLVNSLLDFSRIEAG 421

CP000091_1849: domain 1 of 1, from 223 to 288: score 63.0, E = 9.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a+++H LRTPLta+++ a+l ++ +e +
CP000091_1 223 TQRAFVADAAHALRTPLTALQLQAQLVER---------AEDPQAR-- 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++++ +++ +erl +L+ +lL+l+r e g
CP000091_1 259 ----------RQAVSNLRQGLERLTHLVAQLLTLARQEPG 288

CP000091_0647: domain 1 of 1, from 274 to 340: score 63.0, E = 9.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efla+l+HELR+PL+ + +++++++ ++ + +
CP000091_0 274 RMKEFLAMLAHELRNPLAPMYSATSIMER---------APDDLSLV- 310

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ++ r++++l rL++dlLd ri ag
CP000091_0 311 ----------KANLGIVGRQLRHLTRLVDDLLDVGRIAAG 340

CP000091_1442: domain 1 of 1, from 1020 to 1088: score 62.6, E = 1.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++efla +sHEL+ PL+ I++ +el+ + ++ + +++
CP000091_1 1020 RRDEFLAVVSHELKHPLNLISASSELIARSAE------ARRNPVI-- 1058

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ti+r ++ ++i+dlLd+sr+++g
CP000091_1 1059 ----------ARATATIRRTVQNQAQIIDDLLDMSRMRTG 1088

CP000091_0497: domain 1 of 1, from 245 to 311: score 57.0, E = 4.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f a+l+H++RTP++ + g +e+ l+ + +s +
CP000091_0 245 RLSAFSADLAHDFRTPISNLVGQTEVTLA---------QSRSVAE-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +le+ l+e erl+r+i+++L l+r+++
CP000091_0 281 ---------YEALLESNLEEYERLSRMIENMLFLARADHA 311

CP000091_1068: domain 2 of 2, from 783 to 849: score 55.9, E = 9.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efl l+HELR PL++I+ +a++L + + e +
CP000091_1 783 RKDEFLNILAHELRGPLATISNTAHILGQ---------SRTDTELA- 819

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ ++i+r++++l rL++dlLd ri +g
CP000091_1 820 ----------RDAQKRIERQLRHLVRLVDDLLDTNRITQG 849

CP000091_1695: domain 1 of 1, from 228 to 293: score 48.3, E = 1.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+an +HELRTP++a ++ ++ L + e+++ +
CP000091_1 228 AERSFTANSAHELRTPIAAALAQTQRLMD----------EMPSAAM- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++ ++r+++ l+r ++l++l+++e+g
CP000091_1 264 ----------RERVQNVERSLHTLSRVSERLMQLAKAENG 293

CP000091_1502: domain 1 of 1, from 286 to 351: score 40.2, E = 2.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f+a lsHELR PL++I+ +++L + s+e
CP000091_1 286 MKDDFIAILSHELRSPLNVISIWTHVLNQ---------HINSDEG-- 321

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l ++r + +rLi dl d s + g
CP000091_1 322 ----------RRGLAAVERNITIQRRLIADLVDVSMLNVG 351

CP000091_1131: domain 1 of 1, from 184 to 242: score 40.1, E = 3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s la++sH+L+TP+t +r+ aelL +
CP000091_1 184 ERSATLAAMSHDLKTPITRLRLRAELLDD------------------ 212

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ + i ++++ ++++++ L + r +
CP000091_1 213 ----------GELKQEISQDLHDMESMVQATLAFMRGGDS 242

CP000091_0899: domain 1 of 1, from 151 to 216: score 37.8, E = 1.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +l +l H++R PL +Ir++a+ L + +++e
CP000091_0 151 AHNLLLGMLGHDMRSPLQTIRMTASYLAA---------LNAGEAV-- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++r++ r++ L++dl d+ r g
CP000091_0 187 ----------SDAAARLIRSGARMQTLLDDLCDFNRTKLG 216

CP000091_1468: domain 1 of 1, from 576 to 641: score 31.8, E = 6.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l+ lsH++R P ++I+++++l + ++ + +
CP000091_1 576 QREQMLRFLSHDMRSPQASILALIDLHRG---------AAGDGPP-- 611

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l +i a+r +L +d+ +r+e++
CP000091_1 612 ----------AELLTRIGAHARRTMSLADDFIRVARAETQ 641

CP000091_0446: domain 1 of 1, from 231 to 289: score 28.5, E = 5.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + la++sH+L TP+t +++ ae++ + +e+
CP000091_0 231 ERVQILAAISHDLQTPITRMKLRAEMADD-------------SEE-- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ ++ L+ + L ++r +g
CP000091_0 263 -------------KRKMVNDLAEIETLVKEGLAYARSAHG 289


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 5 0|=
-13 17 1|*==
-12 83 55|======*====
-11 202 285|========================== *
-10 403 529|=================================================== *
-9 463 546|==========================================================*
-8 439 409|===================================================*===
-7 333 257|================================*=========
-6 203 148|==================*=======
-5 102 81|==========*==
-4 61 43|=====*==
-3 30 23|==*=
-2 25 12|=*==
-1 8 6|*
0 7 3|*
1 1 1|*
2 0 0|
3 1 0|=
> 4 24 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 154.1485
P(chi-square) = 2.114e-27

Total sequences searched: 2407

Whole sequence top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: