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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Pseudomonas fluorescens Pf0-1  

Data for CP000094  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000094.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000094_4217 CDS_4765531-4768299 102.8 1.3e-28 1
CP000094_4206 CDS_4752537-4754438 94.0 3.8e-26 1
CP000094_0611 CDS_719529-716752 93.8 4.4e-26 1
CP000094_3036 CDS_3479112-3482273 91.6 1.8e-25 1
CP000094_3974 CDS_4507744-4510080 89.2 8.7e-25 1
CP000094_1863 CDS_2124429-2127638 81.9 1e-22 1
CP000094_5602 CDS_6278680-6280002 79.7 4.3e-22 1
CP000094_3133 CDS_3598963-3599838 78.7 8.4e-22 1
CP000094_3034 CDS_3475040-3477850 78.3 1.1e-21 1
CP000094_3970 CDS_4499587-4503231 76.9 2.7e-21 1
CP000094_2644 CDS_3031385-3034876 76.8 2.8e-21 1
CP000094_4834 CDS_5457721-5459310 75.8 5.5e-21 1
CP000094_3851 CDS_4356915-4358255 72.5 4.8e-20 1
CP000094_4025 CDS_4556331-4553680 71.1 1.2e-19 1
CP000094_4939 CDS_5573100-5570752 70.8 1.4e-19 1
CP000094_0047 CDS_50798-52588 70.3 2e-19 1
CP000094_5190 CDS_5845138-5843720 70.3 2e-19 1
CP000094_2161 CDS_2443738-2445975 69.7 2.9e-19 1
CP000094_2760 CDS_3188399-3189520 67.5 1.2e-18 1
CP000094_3351 CDS_3828793-3830160 66.5 2.4e-18 1
CP000094_4659 CDS_5263403-5264767 66.2 2.9e-18 1
CP000094_0340 CDS_385285-384200 65.8 3.7e-18 1
CP000094_1354 CDS_1529974-1531359 65.7 3.9e-18 1
CP000094_3249 CDS_3735029-3733392 63.9 1.2e-17 1
CP000094_4239 CDS_4787332-4785722 61.2 7.3e-17 1
CP000094_2831 CDS_3268195-3266882 60.1 1.6e-16 1
CP000094_1532 CDS_1721306-1722517 58.3 4.9e-16 1
CP000094_1480 CDS_1663267-1661927 57.6 7.6e-16 1
CP000094_1659 CDS_1852457-1848987 57.4 9.1e-16 1
CP000094_4492 CDS_5073166-5071892 56.7 1.4e-15 1
CP000094_3376 CDS_3853752-3855167 56.4 1.7e-15 1
CP000094_3621 CDS_4098761-4100170 54.3 6.8e-15 1
CP000094_3929 CDS_4449199-4447874 54.1 7.9e-15 1
CP000094_4215 CDS_4764614-4763196 54.0 8e-15 1
CP000094_3386 CDS_3867984-3866698 49.0 2.2e-13 1
CP000094_4802 CDS_5420622-5423570 48.5 3.1e-13 1
CP000094_0288 CDS_335724-333910 46.5 1.1e-12 1
CP000094_2889 CDS_3331948-3330647 45.9 1.6e-12 1
CP000094_0203 CDS_241469-242857 45.6 2e-12 1
CP000094_0579 CDS_672384-671257 45.3 2.3e-12 1
CP000094_0261 CDS_308430-309743 44.8 3.2e-12 1
CP000094_2647 CDS_3036293-3037507 44.3 4.7e-12 1
CP000094_2002 CDS_2285878-2287371 44.0 5.7e-12 1
CP000094_2456 CDS_2812280-2810826 43.1 1e-11 1
CP000094_3134 CDS_3599828-3601771 42.9 1.2e-11 1
CP000094_2808 CDS_3237600-3240596 42.3 1.6e-11 2
CP000094_1999 CDS_2280268-2281716 42.1 2e-11 1
CP000094_2689 CDS_3099826-3101745 41.7 2.6e-11 1
CP000094_3079 CDS_3531893-3534430 38.9 1.5e-10 1
CP000094_2650 CDS_3040774-3039104 37.8 3.1e-10 1
CP000094_2250 CDS_2584441-2582468 37.8 3.2e-10 1
CP000094_4534 CDS_5113458-5115371 36.5 7.4e-10 1
CP000094_2700 CDS_3113841-3112510 34.0 3.9e-09 1
CP000094_4418 CDS_4979890-4981926 33.7 4.7e-09 1
CP000094_4367 CDS_4927436-4926009 33.1 6.9e-09 1
CP000094_0637 CDS_750667-747902 32.7 9.1e-09 1
CP000094_4193 CDS_4738763-4739812 29.3 8.2e-08 1
CP000094_3136 CDS_3606550-3604439 28.7 1.2e-07 1
CP000094_4550 CDS_5138047-5139450 27.9 2.1e-07 2
CP000094_4452 CDS_5028055-5029815 27.4 2.8e-07 1
CP000094_5704 CDS_6399980-6398433 27.1 3.4e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000094_4217 1/1 289 354 .. 1 87 [] 102.8 1.3e-28
CP000094_4206 1/1 263 328 .. 1 87 [] 94.0 3.8e-26
CP000094_0611 1/1 397 462 .. 1 87 [] 93.8 4.4e-26
CP000094_3036 1/1 481 546 .. 1 87 [] 91.6 1.8e-25
CP000094_3974 1/1 296 361 .. 1 87 [] 89.2 8.7e-25
CP000094_1863 1/1 581 647 .. 1 87 [] 81.9 1e-22
CP000094_5602 1/1 205 272 .. 1 87 [] 79.7 4.3e-22
CP000094_3133 1/1 57 125 .. 1 87 [] 78.7 8.4e-22
CP000094_3034 1/1 453 518 .. 1 87 [] 78.3 1.1e-21
CP000094_3970 1/1 716 782 .. 1 87 [] 76.9 2.7e-21
CP000094_2644 1/1 493 561 .. 1 87 [] 76.8 2.8e-21
CP000094_4834 1/1 309 375 .. 1 87 [] 75.8 5.5e-21
CP000094_3851 1/1 225 291 .. 1 87 [] 72.5 4.8e-20
CP000094_4025 1/1 651 719 .. 1 87 [] 71.1 1.2e-19
CP000094_4939 1/1 417 482 .. 1 87 [] 70.8 1.4e-19
CP000094_0047 1/1 376 444 .. 1 87 [] 70.3 2e-19
CP000094_5190 1/1 255 320 .. 1 87 [] 70.3 2e-19
CP000094_2161 1/1 520 591 .. 1 87 [] 69.7 2.9e-19
CP000094_2760 1/1 150 215 .. 1 87 [] 67.5 1.2e-18
CP000094_3351 1/1 238 303 .. 1 87 [] 66.5 2.4e-18
CP000094_4659 1/1 236 302 .. 1 87 [] 66.2 2.9e-18
CP000094_0340 1/1 132 197 .. 1 87 [] 65.8 3.7e-18
CP000094_1354 1/1 244 309 .. 1 87 [] 65.7 3.9e-18
CP000094_3249 1/1 179 244 .. 1 87 [] 63.9 1.2e-17
CP000094_4239 1/1 308 373 .. 1 87 [] 61.2 7.3e-17
CP000094_2831 1/1 211 277 .. 1 87 [] 60.1 1.6e-16
CP000094_1532 1/1 185 251 .. 1 87 [] 58.3 4.9e-16
CP000094_1480 1/1 226 290 .. 1 87 [] 57.6 7.6e-16
CP000094_1659 1/1 796 863 .. 1 87 [] 57.4 9.1e-16
CP000094_4492 1/1 211 277 .. 1 87 [] 56.7 1.4e-15
CP000094_3376 1/1 245 311 .. 1 87 [] 56.4 1.7e-15
CP000094_3621 1/1 244 310 .. 1 87 [] 54.3 6.8e-15
CP000094_3929 1/1 225 289 .. 1 87 [] 54.1 7.9e-15
CP000094_4215 1/1 234 293 .. 1 87 [] 54.0 8e-15
CP000094_3386 1/1 208 273 .. 1 87 [] 49.0 2.2e-13
CP000094_4802 1/1 754 820 .. 1 87 [] 48.5 3.1e-13
CP000094_0288 1/1 370 438 .. 1 87 [] 46.5 1.1e-12
CP000094_2889 1/1 212 277 .. 1 87 [] 45.9 1.6e-12
CP000094_0203 1/1 242 308 .. 1 87 [] 45.6 2e-12
CP000094_0579 1/1 152 218 .. 1 87 [] 45.3 2.3e-12
CP000094_0261 1/1 221 280 .. 1 87 [] 44.8 3.2e-12
CP000094_2647 1/1 168 241 .. 1 87 [] 44.3 4.7e-12
CP000094_2002 1/1 272 336 .. 1 87 [] 44.0 5.7e-12
CP000094_2456 1/1 257 327 .. 1 87 [] 43.1 1e-11
CP000094_3134 1/1 282 350 .. 1 87 [] 42.9 1.2e-11
CP000094_1999 1/1 270 334 .. 1 87 [] 42.1 2e-11
CP000094_2689 1/1 279 345 .. 1 87 [] 41.7 2.6e-11
CP000094_3079 1/1 471 539 .. 1 87 [] 38.9 1.5e-10
CP000094_2650 1/1 185 253 .. 1 87 [] 37.8 3.1e-10
CP000094_2250 1/1 416 486 .. 1 87 [] 37.8 3.2e-10
CP000094_4534 1/1 413 481 .. 1 87 [] 36.5 7.4e-10
CP000094_2808 2/2 623 691 .. 1 87 [] 36.3 8.7e-10
CP000094_2700 1/1 238 296 .. 1 87 [] 34.0 3.9e-09
CP000094_4418 1/1 412 502 .. 1 87 [] 33.7 4.7e-09
CP000094_4367 1/1 270 313 .. 1 65 [. 33.1 6.9e-09
CP000094_0637 1/1 683 753 .. 1 87 [] 32.7 9.1e-09
CP000094_4193 1/1 145 188 .. 1 65 [. 29.3 8.2e-08
CP000094_3136 1/1 336 402 .. 1 87 [] 28.7 1.2e-07
CP000094_4452 1/1 363 431 .. 1 87 [] 27.4 2.8e-07
CP000094_5704 1/1 286 335 .. 1 69 [. 27.1 3.4e-07

Alignments of top-scoring domains:
CP000094_4217: domain 1 of 1, from 289 to 354: score 102.8, E = 1.3e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTPL++I+g+++lL++ +el++ q
CP000094_4 289 IKSEFLANMSHEIRTPLNGILGFTHLLQK---------SELTPRQ-- 324

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl ti+++a++ll +in++Ld+s+ieag
CP000094_4 325 ----------LDYLGTIEKSADSLLGIINEILDFSKIEAG 354

CP000094_4206: domain 1 of 1, from 263 to 328: score 94.0, E = 3.8e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTP+++++g+++lL++ t+++eeq
CP000094_4 263 AKSDFLAMMSHELRTPMNGVLGMLQLLET---------TDMTEEQ-- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey + +++e+ll+ ind+Ld+srie
CP000094_4 299 ----------VEYAALASESTEHLLKVINDILDFSRIERS 328

CP000094_0611: domain 1 of 1, from 397 to 462: score 93.8, E = 4.4e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak efla +sHE+RTP+++++g++elLl t+ls +q
CP000094_0 397 AKAEFLAKISHEIRTPMNGVLGMTELLLG---------TPLSVKQ-- 432

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ti+++++ ll Lin++Ld+sr+e+g
CP000094_0 433 ----------RDYVQTIHSAGNELLTLINEILDISRLESG 462

CP000094_3036: domain 1 of 1, from 481 to 546: score 91.6, E = 1.8e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTPL +++g++elL t+l + q
CP000094_3 481 AKSRFLATISHEIRTPLYGVLGTLELLGL---------TALAPRQ-- 516

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyleti+r++ +l +Li+d+Ld s+ieag
CP000094_3 517 ----------QEYLETIQRSSASLFKLISDVLDVSKIEAG 546

CP000094_3974: domain 1 of 1, from 296 to 361: score 89.2, E = 8.7e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s flan+sHE+RTPL++++g++ l l+ ++l++eq
CP000094_3 296 ARSAFLANMSHEIRTPLNGLLGMIALSLD---------GPLNAEQ-- 331

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++++++++ l +L+nd+Ldls+ +ag
CP000094_3 332 ----------QQQLSIAHDSGKVLVELLNDILDLSKFDAG 361

CP000094_1863: domain 1 of 1, from 581 to 647: score 81.9, E = 1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP++a++g++el+l+ +++ + +
CP000094_1 581 AKSTFLATMSHEIRTPMNALIGMLELALK--------RADEGVTD-- 617

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++e++ +++++ll+Li d+Ld++rie+g
CP000094_1 618 ----------RQAIEVASSAGQQLLALIGDILDIARIESG 647

CP000094_5602: domain 1 of 1, from 205 to 272: score 79.7, E = 4.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPLt+I gy+e+Ll+++ +e ++
CP000094_5 205 MRKDFIANVSHELRTPLTVICGYLETLLDNV-------EEVNPRW-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ +++++ r++ L+ndlL l+++ea
CP000094_5 243 ----------SRALQQMQQQGGRMQTLLNDLLLLAKLEAT 272

CP000094_3133: domain 1 of 1, from 57 to 125: score 78.7, E = 8.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fl+++sHE+RTPL +I+ +lL +eld ++ls+eq
CP000094_3 57 LKSRFLSYMSHEFRTPLGSILSINSLLADELD------GPLSPEQ-- 95

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + + +a+ l+++++dlLdl++ieag
CP000094_3 96 ----------HKQVAFVSTAARELSDMVDDLLDLAKIEAG 125

CP000094_3034: domain 1 of 1, from 453 to 518: score 78.3, E = 1.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fla++sHE+RTPL +++g++elL + t l+ +q
CP000094_3 453 AKTLFLATMSHEIRTPLYGVLGTLELLAR---------TQLDTQQ-- 488

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl+ i+ ++ ll+Li d+Ld s+ieag
CP000094_3 489 ----------KSYLRAIEGSSATLLQLICDVLDVSKIEAG 518

CP000094_3970: domain 1 of 1, from 716 to 782: score 76.9, E = 2.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP++a++g++el l+++d ++ ++
CP000094_3 716 AKSTFLATMSHEIRTPMNAVIGMLELTLKRMD------QTHPDRSG- 755

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+et++++a+ ll Li d+Ld++rie+g
CP000094_3 756 -------------IETAYHSAKDLLGLIGDILDIARIESG 782

CP000094_2644: domain 1 of 1, from 493 to 561: score 76.8, E = 2.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++ + +a+lL e ++ls+eq
CP000094_2 493 YKSEFLANMSHELRTPLNSSLILAKLLAE------NPQENLSAEQ-- 531

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e+i+++++ ll+Lind+Ld+s+ eag
CP000094_2 532 ----------VKFAESIYSAGNDLLNLINDILDISKVEAG 561

CP000094_4834: domain 1 of 1, from 309 to 375: score 75.8, E = 5.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+++HE+R+PL aI+ +a+lL+e ++el++ +
CP000094_4 309 ALGRLTAGIAHEIRNPLGAISHAAQLLQE--------SEELDSAD-- 345

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++++i++ ++r++r i+++L+lsr ++
CP000094_4 346 ----------RRLTQIIQDHSQRMNRVIENVLQLSRRQQS 375

CP000094_3851: domain 1 of 1, from 225 to 291: score 72.5, E = 4.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f a+++HELRTPL+ +++ +++ l+ +++ e+
CP000094_3 225 RLSAFSADIAHELRTPLSNLLTQTQVTLT---------RPRPLED-- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre+l++ l+e++ + +L+nd+L l+++++g
CP000094_3 261 ---------YREALHSNLEELQWMAQLVNDMLYLAKADHG 291

CP000094_4025: domain 1 of 1, from 651 to 719: score 71.1, E = 1.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +la++sH+LRTPLt++rg ++ Ll+ + ++ + e+r
CP000094_4 651 LRSALLASVSHDLRTPLTSMRGSIDSLLALG-------EAIPLEDR- 689

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+le ++eaerl+r i++lLd++r+++g
CP000094_4 690 ----------RELLEGTRDEAERLDRYIQNLLDMTRLGHG 719

CP000094_4939: domain 1 of 1, from 417 to 482: score 70.8, E = 1.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+l HELRTP+++++g +el+++ el++e
CP000094_4 417 LKDEFLATLTHELRTPMNGVIGSLELMQT---------VELDPEL-- 452

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y +t+ +a+ + r++n +L+l+ ++ag
CP000094_4 453 ----------EQYQQTAAGSARDMMRMVNGILTLTELQAG 482

CP000094_0047: domain 1 of 1, from 376 to 444: score 70.3, E = 2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+sef+ +sHELRTP+t++ ++ l +e +++ +ee r
CP000094_0 376 VRSEFVLRASHELRTPVTGMHMAFGLFRE--------RAKFPEESRE 414

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+t+ +e +rl +LindlL +sr ++g
CP000094_0 415 ----------SDLLDTVNEEMQRLMQLINDLLNFSRYQSG 444

CP000094_5190: domain 1 of 1, from 255 to 320: score 70.3, E = 2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HEL+ PL+aIrg+aelL++ e+s++qr
CP000094_5 255 YVERYVHTLTHELKSPLAAIRGAAELLQD----------EMSADQR- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i++e+ r+++Li++lLdl++ e+
CP000094_5 291 ----------LRFVGNIDSESARMQQLIERLLDLAQVEQR 320

CP000094_2161: domain 1 of 1, from 520 to 591: score 69.7, E = 2.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a +sH+LR+P+t+I++++ ++++ a +++ + r+
CP000094_2 520 ARDELVAVVSHDLRNPMTVISMLCGMMQK------AFSSDGPHTSRR 560

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++t++++a r++ L++dlLd s+i+ag
CP000094_2 561 ---------ISTAIDTMQQAAGRMNTLLEDLLDTSKIDAG 591

CP000094_2760: domain 1 of 1, from 150 to 215: score 67.5, E = 1.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a l H+LRTPL+aIr+ a+lL++ + +
CP000094_2 150 LREQFVAVLGHDLRTPLSAIRMSADLLET---------KTTDKRS-- 185

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i+ ++ r+ +Li+++Ld++r + g
CP000094_2 186 ----------LSLISAIRTSSTRMGNLIENVLDFARGRMG 215

CP000094_3351: domain 1 of 1, from 238 to 303: score 66.5, E = 2.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a+++HE+RTPL+++r +a+ Lle + +e++r
CP000094_3 238 RERRFIADAAHEMRTPLAVLRVHAQNLLE----------AGTEQER- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re le ++ ++r +rL+n+lL+++r+e
CP000094_3 274 ----------RESLEFLIAGVDRTSRLVNQLLTMARLEPK 303

CP000094_4659: domain 1 of 1, from 236 to 302: score 66.2, E = 2.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELR PLt ++g ++++l+ +s+e+
CP000094_4 236 RLESFNADVAHELRSPLTNLIGQTQVALT---------RGRSAEH-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e l++ l+e+erl+++ind+L l+ +++g
CP000094_4 272 ---------YFEVLQSNLEELERLRSIINDMLFLASADQG 302

CP000094_0340: domain 1 of 1, from 132 to 197: score 65.8, E = 3.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+HE+++PL +Irg+a+lL + el+e+ +
CP000094_0 132 TSKMLVRGLAHEIKNPLGGIRGAAQLLAR----------ELPEDSL- 167

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+++i++ea+rl++L++++L ++ +
CP000094_0 168 ----------RDYTNVIIEEADRLRNLVDRMLGSNKLPSL 197

CP000094_1354: domain 1 of 1, from 244 to 309: score 65.7, E = 3.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+a+++HELRTPL+a+++ +el l+ +e+q+
CP000094_1 244 RQAQFIADAAHELRTPLAALKARLELGLR-----------SNEPQT- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r+ le+ ++++rl +L n+lL l+r e+g
CP000094_1 279 ---------WRDTLESSAQSTDRLTHLANQLLSLARVENG 309

CP000094_3249: domain 1 of 1, from 179 to 244: score 63.9, E = 1.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla +sH+LR+P+++I +++ L+e + l+ee+
CP000094_3 179 EKSRFLAQASHDLRQPIHSIGLFTACLRE---------SRLGEEE-- 214

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++++i+r++ ++L + +Ldl +++g
CP000094_3 215 ----------RRLVDSIDRSLLNVSQLFRSILDLYTLDNG 244

CP000094_4239: domain 1 of 1, from 308 to 373: score 61.2, E = 7.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e+++++sHELRTP++ +r+ +e++ + +++ +
CP000094_4 308 IQRELVRAVSHELRTPVARLRFGLEMIGS----------ATTPQAL- 343

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y e +++++e l++L++++L+++r+e+g
CP000094_4 344 ----------EKYREGMDHDIEDLDKLVDEMLTYARLEQG 373

CP000094_2831: domain 1 of 1, from 211 to 277: score 60.1, E = 1.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f++++sHELRTPL ++ g++elLl++ + l+
CP000094_2 211 REKLFTSDVSHELRTPLMVLGGACELLLAN--------PSLDTRS-- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i r+++ +++L++ +L l+r+++
CP000094_2 248 ----------AAQVNRIARASHEMRQLVDTFLMLARAQED 277

CP000094_1532: domain 1 of 1, from 185 to 251: score 58.3, E = 4.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+H++RTPL+a ++ya+ L e +el+ ++
CP000094_1 185 SLGRMVASLAHQIRTPLSAALLYASHLTE---------QELPVATQ- 221

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++++ ++ l+++++d+L ++r e +
CP000094_1 222 ----------QRFAGRLKERLHELEHQVRDMLVFARGELP 251

CP000094_1480: domain 1 of 1, from 226 to 290: score 57.6, E = 7.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l+++sHELR PL+ +r ++ l+++ +s+e+r
CP000094_1 226 SQRQLLRDVSHELRSPLARLRIALALAER-----------ASPEER- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ re +rl++Li+++L l+r +a
CP000094_1 261 ----------EKLWPRLTRECDRLEALISEILVLARVDAD 290

CP000094_1659: domain 1 of 1, from 796 to 863: score 57.4, E = 9.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +PL+a r+++ +L ++ + lsee
CP000094_1 796 SKTRFLAAVSHDLMQPLNAARLFSAALSHQA-------DGLSEEA-- 833

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ +++++++ ++Li+dlLd+sr+e+g
CP000094_1 834 ----------QKLVQHLDSSLRSAEDLISDLLDISRLENG 863

CP000094_4492: domain 1 of 1, from 211 to 277: score 56.7, E = 1.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f++++sHELRTPL ++ +elLle+ + +
CP000094_4 211 RERLFTSDVSHELRTPLMVLASSCELLLEN--------PGIDQRG-- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i r++e +++L++ +L l+r++ +
CP000094_4 248 ----------KAQVQRIARASEEMRELVQTFLMLARAQRE 277

CP000094_3376: domain 1 of 1, from 245 to 311: score 56.4, E = 1.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+ +++HELRTP++ ++g ++++l +++s +
CP000094_3 245 QLSQVSTDMAHELRTPINNLLGETQVALQ---------QNRSVDA-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++l + +e+erl r+++++L l+r +
CP000094_3 281 ---------YQQLLASNVEELERLARMLDNMLFLARTDPA 311

CP000094_3621: domain 1 of 1, from 244 to 310: score 54.3, E = 6.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f +l+HELRTP++ ++g a++ l e+s e+
CP000094_3 244 QLSQFSDDLAHELRTPINNLMGKAQVTLS---------RERSVEE-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y l + +e+er r+++d+L l+++ ++
CP000094_3 280 ---------YTNVLVSCTEELERVARIVSDMLFLAQASQP 310

CP000094_3929: domain 1 of 1, from 225 to 289: score 54.1, E = 7.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++HELR PLtaI+++++++++ t+ s+ +
CP000094_3 225 RERRLTGDAAHELRSPLTAIKTHLQVARM---------TDGSARD-- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ++++ a+rl r +++lL l+r e
CP000094_3 261 -----------QSLARAEEGADRLHRTLEQLLLLARVEGS 289

CP000094_4215: domain 1 of 1, from 234 to 293: score 54.0, E = 8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l++lsHELRTPL+ +r ++e e+q+
CP000094_4 234 LQQQLLRDLSHELRTPLSRLRVASES----------------EQQL- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e+i re++ ++rL++d L+l++++++
CP000094_4 264 ----------QPLRERIGREVDVMQRLVEDTLQLAWLDTE 293

CP000094_3386: domain 1 of 1, from 208 to 273: score 49.0, E = 2.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++ ++sHELRTP++ +++ ++ L+ ++ ++
CP000094_3 208 NQRELTNAVSHELRTPIARLSFELDQLKQ---------QPDASQN-- 243

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++ ++ ++ l++++++lL+++ +e g
CP000094_3 244 ----------RELIADMYADLGELEEMVSELLTYASLERG 273

CP000094_4802: domain 1 of 1, from 754 to 820: score 48.5, E = 3.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a+++HE+ +P+t+I +a+ L+e + ++ ++
CP000094_4 754 SIGRLAAGVAHEIGNPITGIACLAQNLRE---------EREDDGEL- 790

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ il++++r +r+++ l+ ++ +++
CP000094_4 791 ----------TEISGQILEQTKRVSRIVQSLMSFAHAGSH 820

CP000094_0288: domain 1 of 1, from 370 to 438: score 46.5, E = 1.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ + a++sHEL++PL+aIr yae ++ ld +e++e+
CP000094_0 370 ALGTMSASISHELNQPLAAIRSYAENAEVLLD------HERTEDA-- 408

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ i + + r+ ++i l+ ++r +
CP000094_0 409 ----------RGNLKLISELTGRMASIIAHLRAFARRDRH 438

CP000094_2889: domain 1 of 1, from 212 to 277: score 45.9, E = 1.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l ++sHELRTPLt + + + l+l ++l+
CP000094_2 212 QQRDLLNAVSHELRTPLTRLDFGLALALS---------DDLPQAS-- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l+ + ++ l++L+ +lL +sr++++
CP000094_2 248 ----------RERLQGLVAHIRELDELVLELLSYSRLQNP 277

CP000094_0203: domain 1 of 1, from 242 to 308: score 45.6, E = 2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f a+l+HE+RTPL+++++ +l+ ++ s+e
CP000094_0 242 RLSQFSADLAHEIRTPLHTLLASNGQALN--------YPRSSAEY-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l + +e erl r+ ++l+ l+r+e+
CP000094_0 279 ----------QEVLASNMEEFERLKRMAENLMFLARAEQA 308

CP000094_0579: domain 1 of 1, from 152 to 218: score 45.3, E = 2.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fla l H+LR PL a+++ +elL + t+l +
CP000094_0 152 SRDIFLAILGHDLRAPLQAVSMSTELLMR--------KTTLEGDA-- 188

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
i++ a+++ ++++dlL+l r + g
CP000094_0 189 ----------LTCALNIKQGARHMAAMVSDLLELVRSRLG 218

CP000094_0261: domain 1 of 1, from 221 to 280: score 44.8, E = 3.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRTPLt +r+ +el+ + r
CP000094_0 221 ERELMLAGVSHDLRTPLTRLRLSLELMGD----------------R- 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ + r++e ++++++++L + r +
CP000094_0 251 ----------TDLTDDMVRDIEDMDAILDQFLAFIRDGRD 280

CP000094_2647: domain 1 of 1, from 168 to 241: score 44.3, E = 4.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ ++HE RTPL+++++ ++l ++ + ++++ + ++
CP000094_2 168 MRDDFMSIVAHEVRTPLNGLILETQLRKM-----HLARDNAAAFTLD 209

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ++++ +r++++l rLi+d+Ld sri++g
CP000094_2 210 KM--------HAMVDRDERQIKSLIRLIEDMLDVSRIRTG 241

CP000094_2002: domain 1 of 1, from 272 to 336: score 44.0, E = 5.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+ ++++H LR+PL++Ir ael++e +s+
CP000094_2 272 ALGEMSSAVAHSLRNPLATIRSSAELAQE----------IASPGA-- 306

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i+++++r++r +++lL r +
CP000094_2 307 ----------QRNIGDIISQVDRMSRWVRELLVSLRPMSD 336

CP000094_2456: domain 1 of 1, from 257 to 327: score 43.1, E = 1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++a+++HE+++PL+a+++ e ++++ + ++e + e++
CP000094_2 257 SMGELAASIAHEINQPLAAVITSGESCKRWIN-----RPEPNLEEA- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l++i++ + r ++ i ++ lsr +
CP000094_2 298 ----------RRSLDRIIQNSVRVSDVIACIRALSRHSEV 327

CP000094_3134: domain 1 of 1, from 282 to 350: score 42.9, E = 1.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ Lt+I++ +el+++++ + ++++
CP000094_3 282 ALGKLTGGIAHDFNNLLTGIITSLELIQKRVA------DGRTDKV-- 320

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y e +l++a++ +L +lL ++r +
CP000094_3 321 ----------QFYAEAALNSARSAASLTHRLLAFARQQPL 350

CP000094_1999: domain 1 of 1, from 270 to 334: score 42.1, E = 2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+ ++++H LR+PL++Ir ael+le ++ +
CP000094_1 270 ALGEMSSAVAHSLRNPLATIRSSAELALE-----------FDAGPA- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ i+ +++r+++ +++lL+ r +
CP000094_1 305 ----------QKNIKDIIGQVDRMSKWVRELLQSLRPLND 334

CP000094_2689: domain 1 of 1, from 279 to 345: score 41.7, E = 2.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +++ +++H++++ Lt+I+g++e+ ++ +++++
CP000094_2 279 AIGQLSGGIAHDFNNLLTVILGNLEIVRK---------RVGDDPKV- 315

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++le + + a r +L +++L ++r ++
CP000094_2 316 ----------SRLLENATQGALRGVSLTQRMLAFARRQEL 345

CP000094_3079: domain 1 of 1, from 471 to 539: score 38.9, E = 1.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+g ++l++++ + + +e
CP000094_3 471 AVGQLTGGIAHDFNNMLTGIIGSLDLMQRYIA------SGRADEI-- 509

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ + ++a+r +L +lL +sr ++
CP000094_3 510 ----------GRFTDAAVSSANRAAALTHRLLAFSRRQSL 539

CP000094_2650: domain 1 of 1, from 185 to 253: score 37.8, E = 3.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+g +elL+++l ++ l++ +
CP000094_2 185 AVGQLTGGIAHDFNNMLTGIIGSLELLRRRLA-----RGRLDDLD-- 224

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +a+r L +lL +sr ++
CP000094_2 225 -----------SLIDLGVTSANRAAGLTHRLLAFSRRQSL 253

CP000094_2250: domain 1 of 1, from 416 to 486: score 37.8, E = 3.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a+++HE ++PL++I+++a+++l+ +g ++ + e +
CP000094_2 416 SLGAVTASIAHEVNQPLAGIITNASTCLR-----MLGADPPNVEGA- 456

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++ +r+++r + in+l+ l +
CP000094_2 457 ----------RETARRTIRDGNRAADVINRLRALFSKKSI 486

CP000094_4534: domain 1 of 1, from 413 to 481: score 36.5, E = 7.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +++ +++HEL++PL+a+r+++ ++l+ + +
CP000094_4 413 AIGQMSTSIAHELNQPLAAMRTLSGNTIRFLE------RGQLDVA-- 451

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ti + ++r+ r+ l+ ++r +
CP000094_4 452 ----------STNLKTINDLIDRMGRITASLRSFARRGDD 481

CP000094_2808: domain 2 of 2, from 623 to 691: score 36.3, E = 8.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I+g++el+ ++ + + l+e +
CP000094_2 623 AVGQLTGGLAHDFNNLLAGISGALELMGARIN-----QGRLNEVD-- 662

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y t++ +++r +L +lL +sr ++
CP000094_2 663 -----------KYMVTAQGAVKRAAALTHRLLAFSRRQTL 691

CP000094_2700: domain 1 of 1, from 238 to 296: score 34.0, E = 3.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LR PLt +r+ +e +++
CP000094_2 238 ERTHMLAAISHDLRAPLTRMRLRSEFMED------------------ 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++r++e ++++in L + r ++
CP000094_2 267 ----------LDHQGKLIRDIEEMQSMINAALAFFREDTH 296

CP000094_4418: domain 1 of 1, from 412 to 502: score 33.7, E = 4.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a+++HE+++PL aI+ +++ ++++l d +++ eq+
CP000094_4 412 SVGGLAAGMAHEINNPLGAILHNVQNIRRRL----SPDLPKNLEQAE 454

peLR.l.......edpeyreyletilreaerllrLindlLdlsrieag<-
+ +l++ ++ +e+ ++l+ i++++ r +++ +L +sr +
CP000094_4 455 QLGIeLdtvnrylQGREVPQLLDGIQQAGARAAKIVTHMLSFSRRSNR 502

*

CP000094_4 - -

CP000094_4367: domain 1 of 1, from 270 to 313: score 33.1, E = 6.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s++++++sH+LRTP+t +r+ +elL++ ++l +
CP000094_4 270 ERSQLFSAISHDLRTPITRLRLRVELLED---------ETLQTKF-- 305

peLRledpeyreyletil<-*
+ l+ ++
CP000094_4 306 ----------GRDLDELE 313

CP000094_0637: domain 1 of 1, from 683 to 753: score 32.7, E = 9.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++ +l+HE+++PL+++r+++ l+ + + ++
CP000094_0 683 TLGEMATGLAHEINQPLNVMRMAIVNVLK---------RLGNGDVQI 720

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++L + l++i+ +++r r ++ ++ + r +
CP000094_0 721 DYL-------TDKLNRIDTQVQRAARVVDHMRVFGRRSEI 753

CP000094_4193: domain 1 of 1, from 145 to 188: score 29.3, E = 8.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++l ++sH+LRTPL+ +++ +e + + ++l +
CP000094_4 145 QRARMLGAVSHDLRTPLSRLKLRLENIND---------DKLQGQM-- 180

peLRledpeyreyletil<-*
r+ l+ ++
CP000094_4 181 ----------RQDLDDMI 188

CP000094_3136: domain 1 of 1, from 336 to 402: score 28.7, E = 1.2e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++ +++H++++ L +I g+++lL + +e + +
CP000094_3 336 SIGGLTGGVAHDFNNLLQVIAGNLHLLAR---------HEPNNANV- 372

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ l ++er +L ++lL ++r +
CP000094_3 373 ----------QRRVSASLAAVERGAKLSSQLLAFARRQPL 402

CP000094_4452: domain 1 of 1, from 363 to 431: score 27.4, E = 2.8e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a+l+HE+++PLta r+ + +L+ ld + + ++
CP000094_4 363 ALGQMSAALAHEINQPLTAQRMQLATLRLLLD------HGRVDDA-- 401

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ +++ + r+ +L l +++r
CP000094_4 402 ----------YKALKPVDDMLTRMAALTGHLKTFARKSPS 431

CP000094_5704: domain 1 of 1, from 286 to 335: score 27.1, E = 3.4e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s +a+++HE ++PL++I+++a+++l+ l+++
CP000094_5 286 SLSAVTASIAHEVNQPLAGIITNASTCLR----------MLGADP-- 320

peLRledpeyreyletilreae<-*
p++ +let++r ++
CP000094_5 321 -------PNVTGALETARRTIR 335


Histogram of all scores:
score obs exp (one = represents 18 sequences)
----- --- ---
-14 12 0|=
-13 49 4|*==
-12 222 131|=======*=====
-11 512 679|============================= *
-10 921 1261|==================================================== *
-9 1062 1302|==========================================================*
-8 1001 975|======================================================*=
-7 725 614|==================================*======
-6 490 353|===================*========
-5 317 194|==========*=======
-4 159 103|=====*===
-3 75 54|==*==
-2 51 28|=*=
-1 28 15|*=
0 17 7|*
1 9 4|*
2 13 2|*
3 2 1|*
> 4 71 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 467.3840
P(chi-square) = 0

Total sequences searched: 5736

Whole sequence top hits:
tophits_s report:
Total hits: 61
Satisfying E cutoff: 61
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 60
Satisfying E cutoff: 60
Total memory: 45K


Acknowledgements:

This research is funded by:

Developed by: