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Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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41 projects found  

1 accessions found for Chlorobium luteolum DSM 273  

Data for CP000096  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000096.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000096_0301 CDS_309968-312871 108.4 1.1e-30 1
CP000096_0624 CDS_738046-739836 100.0 2.8e-28 1
CP000096_1325 CDS_1538313-1535623 83.0 1.8e-23 1
CP000096_0339 CDS_352476-354545 60.1 5.6e-17 1
CP000096_1183 CDS_1370725-1372143 57.4 3.2e-16 1
CP000096_1360 CDS_1573001-1574143 57.2 3.8e-16 1
CP000096_1318 CDS_1529188-1526864 52.1 1e-14 1
CP000096_1961 CDS_2238940-2241384 48.9 8.5e-14 1
CP000096_0864 CDS_1017629-1015413 47.3 2.3e-13 1
CP000096_0374 CDS_422522-420462 37.4 1.5e-10 1
CP000096_0994 CDS_1162949-1164997 32.6 3.6e-09 1
CP000096_1202 CDS_1391301-1389565 31.7 6.3e-09 1
CP000096_0373 CDS_420465-418444 28.0 6.8e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000096_0301 1/1 315 380 .. 1 87 [] 108.4 1.1e-30
CP000096_0624 1/1 363 430 .. 1 87 [] 100.0 2.8e-28
CP000096_1325 1/1 657 725 .. 1 87 [] 83.0 1.8e-23
CP000096_0339 1/1 467 536 .. 1 87 [] 60.1 5.6e-17
CP000096_1183 1/1 244 310 .. 1 87 [] 57.4 3.2e-16
CP000096_1360 1/1 138 206 .. 1 87 [] 57.2 3.8e-16
CP000096_1318 1/1 391 457 .. 1 87 [] 52.1 1e-14
CP000096_1961 1/1 442 508 .. 1 87 [] 48.9 8.5e-14
CP000096_0864 1/1 499 565 .. 1 87 [] 47.3 2.3e-13
CP000096_0374 1/1 461 528 .. 1 87 [] 37.4 1.5e-10
CP000096_0994 1/1 452 508 .. 1 76 [. 32.6 3.6e-09
CP000096_1202 1/1 209 275 .. 1 87 [] 31.7 6.3e-09
CP000096_0373 1/1 445 512 .. 1 87 [] 28.0 6.8e-08

Alignments of top-scoring domains:
CP000096_0301: domain 1 of 1, from 315 to 380: score 108.4, E = 1.1e-30
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++flan+sHE+RTP+++++g+a+lLle t+l+ eq
CP000096_0 315 AKGQFLANMSHEIRTPMNGVIGMADLLLE---------TDLDQEQ-- 350

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ti+++++ ll++ind+Ld+s+ieag
CP000096_0 351 ----------QKYVQTIISSGRNLLKIINDILDFSKIEAG 380

CP000096_0624: domain 1 of 1, from 363 to 430: score 100.0, E = 2.8e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt+Irgyae+Ll+ +++++++++
CP000096_0 363 IRRDFVSSVSHELRTPLTSIRGYAETLLD---------GAMNDPEHA 400

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l++il+e+e+l +L+nd+Ldls+ie+g
CP000096_0 401 ----------QAFLRIILQESEQLTALVNDVLDLSKIESG 430

CP000096_1325: domain 1 of 1, from 657 to 725: score 83.0, E = 1.8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f++++sHELRTPL +I+g++++Ll+e+ + l++ +r
CP000096_1 657 LKNDFISSVSHELRTPLFSILGFSSTLLKES-------GSLDPATR- 695

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++++i++e+ rl++Li+d+L++sri++g
CP000096_1 696 ----------LEFTSIIHDESVRLSSLIEDILTISRIDSG 725

CP000096_0339: domain 1 of 1, from 467 to 536: score 60.1, E = 5.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++++++HE+R+PL+aI + a+ L e+ t++ +e
CP000096_0 467 AMGELASGVAHEIRNPLNAIGLIAQRLDIEF-------TPKEDEA-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+r +l+t+ +e++rl+++i+++L ++r a
CP000096_0 505 --------EFRHLLRTVVSEVHRLNAIIQRFLRFARPPAL 536

CP000096_1183: domain 1 of 1, from 244 to 310: score 57.4, E = 3.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a++sHEL+TPL+a++g++e+L + ++ e+
CP000096_1 244 REKQFTADASHELKTPLSAVQGTLEVLIR---------RPREREH-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e ++ l e++r+ Li++lL l+r +a
CP000096_1 280 ---------YEERIRFCLLELHRMAGLIEQLLLLARHDAR 310

CP000096_1360: domain 1 of 1, from 138 to 206: score 57.2, E = 3.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ n sHELRT L +I+g++++L+ ++ l+ q
CP000096_1 138 QMQDFIGNFSHELRTSLFSILGFTSVLRQ-------DEAVLDTGQ-- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+re+l+++ e+ +++L++d+L lsri ag
CP000096_1 176 ---------FREFLSILNIETLKISSLVEDVLSLSRITAG 206

CP000096_1318: domain 1 of 1, from 391 to 457: score 52.1, E = 1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H+L++ Lt I+gyae+L + ++++r
CP000096_1 391 SIGRLAGGVAHDLNNLLTPILGYAEILDG---------QFGPDDER- 427

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i+ ++ r ++Li++lL +sr ++
CP000096_1 428 ----------LQDIRAIHGAGVRARDLIRQLLAFSRRQSL 457

CP000096_1961: domain 1 of 1, from 442 to 508: score 48.9, E = 8.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +++H++++ Lt ++gyae+ e + e +l
CP000096_1 442 TIGTLAGGIAHDFNNILTPVLGYAEMGAL----------EVPVENHL 478

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ i ++aer +L++++L++sr+++
CP000096_1 479 ----------RDYFREIVQAAERAKNLVSQILTFSRAQES 508

CP000096_0864: domain 1 of 1, from 499 to 565: score 47.3, E = 2.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++ +++H++++ Lt I+gy+el le l+e+
CP000096_0 499 MLGTLAGGIAHDFNNLLTPIIGYSELVLE----------SLPEKS-- 533

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e e l+t++++a r +Li+++L + r +++
CP000096_0 534 --------ELGESLNTVIKAAMRGKKLIRQMLMFGRNDTP 565

CP000096_0374: domain 1 of 1, from 461 to 528: score 37.4, E = 1.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+ ++sHE RTPL+ I+g++ +L +++ + + ++
CP000096_0 461 RVRRFFQMVSHEYRTPLAIIQGNINILSRRS-------RPGDTKK-- 498

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ ++r+a rll+ ++ + sr+ +
CP000096_0 499 ----------PAILHAMHRAAGRLLEVMEQAVERSRLLET 528

CP000096_0994: domain 1 of 1, from 452 to 508: score 32.6, E = 3.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fl +lsHE RTPL+ I+g++++L ++ ++ +ee+
CP000096_0 452 RQNQFLTMLSHEYRTPLAIIQGNLDILAINS-------ENGGEEE-- 489

peLRledpeyreyletilreaerllrLin<-*
+ l++++r++ rl + +
CP000096_0 490 ----------SQELQKMRRAVARLVDVMD 508

CP000096_1202: domain 1 of 1, from 209 to 275: score 31.7, E = 6.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ s+ + +++H++++ L +I+g+a+l+l +l +++se +
CP000096_1 209 SVSRIAGGIAHDFNNSLQSILGHADLMLSRL-------GPASEHD-- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le i++++ ++ +L lL ++r +
CP000096_1 247 -----------GSLEEIRQAVMHCAELTTSLLSFARKRVV 275

CP000096_0373: domain 1 of 1, from 445 to 512: score 28.0, E = 6.8e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fl +l+H+ R PL++I+g++++L + + +e ++e
CP000096_0 445 RMETFLTMLAHDYRSPLSVISGNLDILNRLA-------PEGNSEA-- 482

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +i+++a+rl++L + L +r++++
CP000096_0 483 ----------GTEIGKIRHAAKRLEKLMEISLVHERLQQP 512


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 4 0|=
-13 18 1|*==
-12 96 47|======*=======
-11 205 246|============================== *
-10 364 458|==================================================== *
-9 405 473|==========================================================*
-8 339 354|================================================= *
-7 260 223|===============================*======
-6 152 128|==================*===
-5 90 70|=========*===
-4 47 37|=====*=
-3 39 19|==*===
-2 28 10|=*==
-1 10 5|*=
0 1 2|*
1 3 1|*
2 1 0|=
> 3 21 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 155.6612
P(chi-square) = 1.036e-27

Total sequences searched: 2083

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: