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2 accessions found for Methanosarcina barkeri str. Fusaro  

Data for CP000099  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000099.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000099_1026 CDS_1286048-1282908 97.9 1.8e-27 1
CP000099_2907 CDS_3869109-3871298 94.6 1.6e-26 1
CP000099_0664 CDS_811671-813008 71.8 4.7e-20 1
CP000099_3137 CDS_4172638-4169579 49.2 1.2e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000099_1026 1/1 503 571 .. 1 87 [] 97.9 1.8e-27
CP000099_2907 1/1 487 555 .. 1 87 [] 94.6 1.6e-26
CP000099_0664 1/1 217 285 .. 1 87 [] 71.8 4.7e-20
CP000099_3137 1/1 866 934 .. 1 87 [] 49.2 1.2e-13

Alignments of top-scoring domains:
CP000099_1026: domain 1 of 1, from 503 to 571: score 97.9, E = 1.8e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+kseflan+sHELRTPL++I+g++++L e+++ +el+e+q
CP000099_1 503 SKSEFLANVSHELRTPLNSIIGFSDILIEKVF------GELNEKQ-- 541

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ i ++++ll Lind+Ldls+ eag
CP000099_1 542 ----------FRYVNNISTSGKHLLVLINDILDLSKVEAG 571

CP000099_2907: domain 1 of 1, from 487 to 555: score 94.6, E = 1.6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++I+g+a+lL e+++ +el+e q
CP000099_2 487 TKSEFLANMSHELRTPLNSIIGFADLLYEQVY------GELNERQ-- 525

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i +++++ll+Lin +Ldls+ieag
CP000099_2 526 ----------LKSVGNISKSGKHLLNLINGILDLSKIEAG 555

CP000099_0664: domain 1 of 1, from 217 to 285: score 71.8, E = 4.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ ++ n+ HELRTPL++++g+++lLle+++ + l+ q
CP000099_0 217 AKNGLIVNMNHELRTPLNSVIGFSDLLLEGAF------GSLNTRQ-- 255

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ il +++ ll++i++lLd+sr+eag
CP000099_0 256 ----------SKYVSNILISGKNLLEIISNLLDISRLEAG 285

CP000099_3137: domain 1 of 1, from 866 to 934: score 49.2, E = 1.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ sH+L PL I y++lL++++ ++l+e
CP000099_3 866 ELEQFAYVSSHDLQEPLRMIASYLQLLQRKYQ------GKLDERA-- 904

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+ + + a r+++LindlL++sr +
CP000099_3 905 ----------DKYIYFAVDGASRMQNLINDLLEFSRVTTR 934


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-15 2 0|=
-14 12 0|=
-13 81 2|*======
-12 238 82|======*=============
-11 449 427|===================================*==
-10 684 793|========================================================= *
-9 695 819|==========================================================*
-8 560 613|=============================================== *
-7 356 386|============================== *
-6 224 222|==================*
-5 118 122|==========*
-4 72 65|=====*
-3 52 34|==*==
-2 27 18|=*=
-1 18 9|*=
0 6 4|*
1 4 2|*
2 0 1|*
3 3 0|=
4 0 0|
> 5 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 357.2951
P(chi-square) = 0

Total sequences searched: 3607

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: