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39 projects found  

2 accessions found for Synechococcus elongatus PCC 7942  

Data for CP000100  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000100.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000100_0644 CDS_637075-639339 101.3 1.5e-28 1
CP000100_0922 CDS_931214-929220 95.6 6e-27 1
CP000100_0480 CDS_463901-465634 93.7 2.1e-26 1
CP000100_1814 CDS_1891377-1888444 88.2 7.9e-25 1
CP000100_1009 CDS_1023956-1022715 85.8 3.6e-24 1
CP000100_1870 CDS_1943951-1945399 84.2 1e-23 1
CP000100_1584 CDS_1651359-1652669 78.5 4.2e-22 1
CP000100_1813 CDS_1888451-1887216 74.0 7.9e-21 2
CP000100_2280 CDS_2353015-2351102 66.5 1.1e-18 1
CP000100_2240 CDS_2308246-2307254 39.6 4.5e-11 1
CP000100_1355 CDS_1396770-1391347 38.2 1.1e-10 1
CP000100_0453 CDS_442022-443236 36.7 3.1e-10 1
CP000100_2112 CDS_2194827-2195990 36.1 4.3e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000100_0644 1/1 383 451 .. 1 87 [] 101.3 1.5e-28
CP000100_0922 1/1 396 464 .. 1 87 [] 95.6 6e-27
CP000100_0480 1/1 334 401 .. 1 87 [] 93.7 2.1e-26
CP000100_1814 1/1 477 546 .. 1 87 [] 88.2 7.9e-25
CP000100_1009 1/1 169 233 .. 1 87 [] 85.8 3.6e-24
CP000100_1870 1/1 257 324 .. 1 87 [] 84.2 1e-23
CP000100_1584 1/1 200 267 .. 1 87 [] 78.5 4.2e-22
CP000100_2280 1/1 399 466 .. 1 87 [] 66.5 1.1e-18
CP000100_1813 1/2 7 71 .. 1 87 [] 55.7 1.2e-15
CP000100_2240 1/1 73 140 .. 1 87 [] 39.6 4.5e-11
CP000100_1355 1/1 1582 1649 .. 1 87 [] 38.2 1.1e-10
CP000100_0453 1/1 156 222 .. 1 87 [] 36.7 3.1e-10
CP000100_2112 1/1 151 225 .. 1 87 [] 36.1 4.3e-10

Alignments of top-scoring domains:
CP000100_0644: domain 1 of 1, from 383 to 451: score 101.3, E = 1.5e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efla++sHELRTPLt ++g++++Ll++++ ++l+e q
CP000100_0 383 AKGEFLATMSHELRTPLTCVIGMSSTLLRWAF------GPLTERQ-- 421

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey++ i++++e+ll+Lind+Ldls+ieag
CP000100_0 422 ----------REYIKAIHDSGEHLLELINDILDLSQIEAG 451

CP000100_0922: domain 1 of 1, from 396 to 464: score 95.6, E = 6e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f++n+sHELRTPL I+ ++e+L +++ ++lsee+r
CP000100_0 396 AKSQFISNVSHELRTPLFNIKSFIETLHDYG-------DDLSEEER- 434

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l+t+ +e++rl rL+nd+Ldlsr+e++
CP000100_0 435 ----------REFLSTANHETDRLTRLVNDVLDLSRLESN 464

CP000100_0480: domain 1 of 1, from 334 to 401: score 93.7, E = 2.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++flan sHELRTPLt+++gy++lL+++l +e +ee
CP000100_0 334 LKTDFLANTSHELRTPLTGMIGYLQLLQDDL-------AETPEER-- 371

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ ++++a +ll +ind+Ld++rieag
CP000100_0 372 ----------QEFIAGAYHSALHLLGIINDILDIARIEAG 401

CP000100_1814: domain 1 of 1, from 477 to 546: score 88.2, E = 7.9e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL+aI+gy+e++ ee++ + e++
CP000100_1 477 AKSAFLANMSHELRTPLNAIIGYSEMMMEEAE------DGIEVEEL- 516

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++i +++++ll+Lin +Ldls+ieag
CP000100_1 517 ----------LPDFRKINNAGKHLLELINSILDLSKIEAG 546

CP000100_1009: domain 1 of 1, from 169 to 233: score 85.8, E = 3.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++++HEL+TPLt+Ir++ae+L++ l +e
CP000100_1 169 QRNRWVSDVAHELKTPLTSIRLLAEALRD----------RLQDEP-- 203

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++l e++rl +L++dlL+lsr+e+g
CP000100_1 204 ----------QVWVDRLLGETQRLGQLVQDLLELSRLEQG 233

CP000100_1870: domain 1 of 1, from 257 to 324: score 84.2, E = 1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ n+sHEL+TPLt+I+gy++ Ll+++ ++l++ q
CP000100_1 257 QQQQFVGNVSHELKTPLTVISGYLQSLLRRG-------DNLNSYQ-- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++let+ eaer r+++dlLdl+r ++g
CP000100_1 295 ----------NQALETASAEAERTIRMLQDLLDLARVDSG 324

CP000100_1584: domain 1 of 1, from 200 to 267: score 78.5, E = 4.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+a++sHELR+P+++I+++++++l+ + + l +eq
CP000100_1 200 QLKQFTADASHELRNPIATIQANVQAALT-------EPQGLAPEQ-- 237

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i+r ++rl +L++dlL l+r ++g
CP000100_1 238 ----------QQVLQVIERLTRRLGSLVDDLLFLARQDSG 267

CP000100_2280: domain 1 of 1, from 399 to 466: score 66.5, E = 1.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s ++a + HELRTPL++++ +e L + ++++s++ r
CP000100_2 399 TRSNLTAIIGHELRTPLSTVQVCLESLAT--------EPDMSADLR- 436

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+t+l++aerl+ L++d+L+lsr+e+g
CP000100_2 437 ----------QVMLQTALDDAERLRLLVQDFLTLSRLESG 466

CP000100_1813: domain 1 of 2, from 7 to 71: score 55.7, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + la+++HELRTP++aI+gy++lLle ++ +
CP000100_1 7 SLAR-LAHWRHELRTPINAILGYSQLLLE----------DWAGTAI- 41

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le+i+++++ llrL+n++Ld + g
CP000100_1 42 ----------ATDLERIESAGQELLRLVNEILDPHSSDRG 71

CP000100_2240: domain 1 of 1, from 73 to 140: score 39.6, E = 4.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ la ++HELR PL++++ + +l+l++l e ++e+
CP000100_2 73 FQAGYLARAAHELRSPLSTLMSLNQLILADL-------CESPAEE-- 110

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++++ + +a+rll+L+++l s+ ++g
CP000100_2 111 ----------RVAVQRSQIAARRLLQLLDQLIVVSQWQSG 140

CP000100_1355: domain 1 of 1, from 1582 to 1649: score 38.2, E = 1.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+ +sH+L PL I+++++ L ++ ++l++e
CP000100_1 1582 ELQEFAFVASHDLQEPLRKIQAFSDRLIART-------SNLDDES-- 1619

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+++ ++a r++ Li dlL +sr +
CP000100_1 1620 ----------QDYLRRMASAAGRMQTLIIDLLNYSRVNTR 1649

CP000100_0453: domain 1 of 1, from 156 to 222: score 36.7, E = 3.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ l l H++++PLta+r++a+lLl+ ++ee +
CP000100_0 156 QEQDRLEVLLHQIKNPLTALRTFAKLLLR---------RMQPEERN- 192

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ ++lre++rl +L+n l s+
CP000100_0 193 ----------RQLAASLLRESDRLADLLNLLNSPSQSAPT 222

CP000100_2112: domain 1 of 1, from 151 to 225: score 36.1, E = 4.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a ++H+LR+PLta ++++++++ ++ ++ + +++++++
CP000100_2 151 FLEQVIALVAHDLRNPLTAALLAVDTIQIRS----QSFSVATAKEMQ 193

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ ++++++ ++r+i ++L+ +r +
CP000100_2 194 GL--------CSLFDQARSQLREIERMIAEILEATRHSGE 225


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 10 0|==
-13 35 1|*===
-12 85 59|======*===
-11 233 309|========================== *
-10 428 574|================================================ *
-9 479 592|====================================================== *
-8 439 443|=================================================*
-7 328 279|==============================*======
-6 225 161|=================*=======
-5 132 88|=========*=====
-4 90 47|=====*====
-3 45 24|==*==
-2 25 13|=*=
-1 17 6|*=
0 10 3|*=
1 8 1|*
2 4 0|=
3 2 0|=
4 0 0|
5 1 0|=
> 6 15 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 224.7162
P(chi-square) = 1.016e-311

Total sequences searched: 2611

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: