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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

4 accessions found for Nitrosospira multiformis ATCC 25196  

Data for CP000103  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000103.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000103_2672 CDS_3099808-3096452 88.3 7.7e-25 1
CP000103_2215 CDS_2535510-2536811 86.2 3e-24 1
CP000103_1550 CDS_1786709-1782516 80.1 1.6e-22 1
CP000103_1486 CDS_1706112-1707932 75.9 2.4e-21 1
CP000103_1185 CDS_1380284-1378191 71.7 3.7e-20 1
CP000103_1484 CDS_1703310-1700803 70.2 1e-19 1
CP000103_1281 CDS_1480838-1479126 69.1 2.1e-19 1
CP000103_2190 CDS_2509492-2506892 68.8 2.6e-19 1
CP000103_1153 CDS_1336779-1338335 67.0 8.4e-19 1
CP000103_1485 CDS_1703711-1705801 66.1 1.5e-18 1
CP000103_2281 CDS_2617097-2615085 62.6 1.4e-17 1
CP000103_0828 CDS_949567-948416 57.3 4.6e-16 1
CP000103_0705 CDS_813223-814491 57.1 5.1e-16 1
CP000103_0994 CDS_1162116-1160959 51.1 2.6e-14 1
CP000103_0389 CDS_432720-430486 45.1 1.3e-12 1
CP000103_1627 CDS_1873413-1873183 40.0 3.7e-11 1
CP000103_1283 CDS_1483282-1481294 38.8 7.8e-11 1
CP000103_2001 CDS_2314814-2313198 34.4 1.4e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000103_2672 1/1 421 486 .. 1 87 [] 88.3 7.7e-25
CP000103_2215 1/1 203 270 .. 1 87 [] 86.2 3e-24
CP000103_1550 1/1 711 776 .. 1 87 [] 80.1 1.6e-22
CP000103_1486 1/1 226 292 .. 1 87 [] 75.9 2.4e-21
CP000103_1185 1/1 315 381 .. 1 87 [] 71.7 3.7e-20
CP000103_1484 1/1 475 540 .. 1 87 [] 70.2 1e-19
CP000103_1281 1/1 326 393 .. 1 87 [] 69.1 2.1e-19
CP000103_2190 1/1 497 562 .. 1 87 [] 68.8 2.6e-19
CP000103_1153 1/1 288 356 .. 1 87 [] 67.0 8.4e-19
CP000103_1485 1/1 318 384 .. 1 87 [] 66.1 1.5e-18
CP000103_2281 1/1 438 506 .. 1 87 [] 62.6 1.4e-17
CP000103_0828 1/1 152 217 .. 1 87 [] 57.3 4.6e-16
CP000103_0705 1/1 214 280 .. 1 87 [] 57.1 5.1e-16
CP000103_0994 1/1 152 217 .. 1 87 [] 51.1 2.6e-14
CP000103_0389 1/1 487 559 .. 1 87 [] 45.1 1.3e-12
CP000103_1627 1/1 1 61 [. 5 87 .] 40.0 3.7e-11
CP000103_1283 1/1 433 501 .. 1 87 [] 38.8 7.8e-11
CP000103_2001 1/1 281 346 .. 1 87 [] 34.4 1.4e-09

Alignments of top-scoring domains:
CP000103_2672: domain 1 of 1, from 421 to 486: score 88.3, E = 7.7e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP+++++g++ lLl+ t+l++ q
CP000103_2 421 AKSEFLANMSHEIRTPMNGVLGAVGLLLN---------TTLTPSQ-- 456

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ ++ ++e ll +ind+Ld+s+ieag
CP000103_2 457 ----------RELAGLARASGETLLCIINDILDFSKIEAG 486

CP000103_2215: domain 1 of 1, from 203 to 270: score 86.2, E = 3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPLt+I g++e+L + +++++++++
CP000103_2 203 MRRDFVANVSHELRTPLTVIGGFLETLSD---------DNQPDPDTR 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +le + ++++r+++L++dlL+lsr+e+
CP000103_2 241 ----------KWALELMSEQTRRMQSLVEDLLTLSRLENT 270

CP000103_1550: domain 1 of 1, from 711 to 776: score 80.1, E = 1.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++++g+a++L+ t ls q
CP000103_1 711 AKSIFLAAMSHEIRTPMNGVIGMADVLQQ---------TSLSGYQ-- 746

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++ i+++a ll++i+d+Ld+s+ieag
CP000103_1 747 ----------MEMVDLIRESAFALLEIIEDILDFSKIEAG 776

CP000103_1486: domain 1 of 1, from 226 to 292: score 75.9, E = 2.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ef+a+lsHELR+PL+aI+g ++l+l +++++e +
CP000103_1 226 SKDEFFAMLSHELRNPLNAILGWSQLILQ---------GTMNSESV- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +eti+r a+ ++Li+dl ++sri ag
CP000103_1 263 ----------RKGIETIERNAKIQNKLIEDLFEMSRITAG 292

CP000103_1185: domain 1 of 1, from 315 to 381: score 71.7, E = 3.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+lsHELRTPL+aI+g ++l+l ++l e++
CP000103_1 315 LKDEFLATLSHELRTPLNAILGWSQLILS---------GNLKKEDI- 351

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ leti+r a+ ++Li+dlLd+s i +g
CP000103_1 352 ----------HRGLETIERNARVQNKLIEDLLDMSSIISG 381

CP000103_1484: domain 1 of 1, from 475 to 540: score 70.2, E = 1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla+l+HELR+PL+ I ++ l+ ++ +e
CP000103_1 475 RKDEFLATLAHELRNPLAPIASALTLIAG---------PDGAAEI-- 510

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l +i r+++++ rL++dlL++sri +g
CP000103_1 511 ----------PRLLPVINRQVNYMVRLVDDLLEISRITSG 540

CP000103_1281: domain 1 of 1, from 326 to 393: score 69.1, E = 2.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fl+++sHELR PL++++g+a+l++ +++ + ++
CP000103_1 326 AKSDFLSSMSHELRSPLNVMLGFAQLMES--------SSPPPTFTQ- 363

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ i +++ +ll+Lin +Ldl+ ie+g
CP000103_1 364 ----------MTMLKEINSAGWYLLELINKILDLAAIESG 393

CP000103_2190: domain 1 of 1, from 497 to 562: score 68.8, E = 2.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla+l+HELR+PL+ +r + +L+ + s e +
CP000103_2 497 RKDEFLATLAHELRNPLAPVRNGLAVLKL----------APSMEAT- 532

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+++r++e++ +Li+dlLd sri +g
CP000103_2 533 ----------VRTREIMERQVEHMVHLIDDLLDVSRITSG 562

CP000103_1153: domain 1 of 1, from 288 to 356: score 67.0, E = 8.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fl ++sHEL+TPLta+r a+lL e++ ++l+eeq
CP000103_1 288 QKTRFLQHVSHELKTPLTAMREGADLLVEGVA------GKLTEEQ-- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++++ + +l+r i+dlL +s ++++
CP000103_1 327 ----------QRVASILHSNSLQLQRRIEDLLSYSALQTE 356

CP000103_1485: domain 1 of 1, from 318 to 384: score 66.1, E = 1.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla+lsHELRTPL+aI+g ++l+l +++ e++
CP000103_1 318 IKDDFLATLSHELRTPLNAILGWSQLILQ---------GTMKNEDI- 354

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ leti+r a+ ++Li+dlL++s i ++
CP000103_1 355 ----------QRGLETIERNARAQNKLIEDLLEMSSIISN 384

CP000103_2281: domain 1 of 1, from 438 to 506: score 62.6, E = 1.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL +I gy+ lLle+++ + l+ee
CP000103_2 438 ELENFCYSVSHDLRAPLRGIAGYSRLLLENYY------ERLDEEG-- 476

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l ++++++++ +Li+dlL +s++e
CP000103_2 477 ----------RSFLTNVRSATKHMTDLIEDLLSYSKLERR 506

CP000103_0828: domain 1 of 1, from 152 to 217: score 57.3, E = 4.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+l H+LR+PL+ +++a+l++ + +
CP000103_0 152 LRERFMAALTHDLRNPLSNAKLAAQLIEH----------SSDLGRI- 187

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +i +++r++ +i+dlLd +r ++g
CP000103_0 188 ----------KEFAGKIVASLDRMDGMIQDLLDSARFQSG 217

CP000103_0705: domain 1 of 1, from 214 to 280: score 57.1, E = 5.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef+an+sHELRTP+t+I++ +elL + +++lse
CP000103_0 214 REQEFTANISHELRTPITTILTSCELLVA--------EPNLSERA-- 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + i+++a r+ ++++ lL l+r ++
CP000103_0 251 ----------RMRIGMIESAATRMGEQLQALLFLAREQSL 280

CP000103_0994: domain 1 of 1, from 152 to 217: score 51.1, E = 2.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+l+H+LR+PL+ ++a+l++ t +
CP000103_0 152 LQERFVATLAHDLRNPLSNAHLAAQLIKS---------TSDLNKI-- 187

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ e i + + r++ +i+dlLd + g
CP000103_0 188 ----------KEFAEGIMNNLSRMDGMIRDLLDSIKFHMG 217

CP000103_0389: domain 1 of 1, from 487 to 559: score 45.1, E = 1.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae ++ +l ++l++ +++
CP000103_0 487 AWGEVARRLAHEIKNPLTPIQLSAERIQHKLA------AKLNDNDAQ 527

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +eti +++e l r++n++ +++r+ ++
CP000103_0 528 IL--------HRSTETIVNQVEALKRMVNEFSEYARAPEP 559

CP000103_1627: domain 1 of 1, from 1 to 61: score 40.0, E = 3.7e-11
*->flanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLR
+l+++s ELR PL+ ++ ++el ++ +e+ e++
CP000103_1 1 MLSDASNELRSPLARLQVALELVWQRS-------GEQAEKE------ 34

ledpeyreyletilreaerllrLindlLdlsrieag<-*
l++++ e+erl++Li +lL+lsr+ea+
CP000103_1 35 ---------LSRMETEIERLNELIGRLLELSRLEAE 61

CP000103_1283: domain 1 of 1, from 433 to 501: score 38.8, E = 7.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ +sH+L+ PL aI ++a+ L +++ ++ ++e
CP000103_1 433 ELKSFAYVVSHDLKAPLRAIGALADWLSTDY------LDKFDDEG-- 471

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + + + ++r+ +Li+ +L++sr +
CP000103_1 472 ----------REHMRLLVSRVHRMGNLIDGILQYSRVGRV 501

CP000103_2001: domain 1 of 1, from 281 to 346: score 34.4, E = 1.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L++I +e++ + +++++
CP000103_2 281 AIGKLTGGIAHDFNNLLNVIVNGIEIIAK---------QAQTPTS-- 316

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++le+++r+a + L ++lL+++r +
CP000103_2 317 ----------TRMLESMQRAAAQGTMLTQQLLTFARKQPL 346


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 3 0|=
-13 21 2|*==
-12 141 63|=======*==========
-11 287 326|==================================== *
-10 468 606|==========================================================*
-9 472 626|==========================================================*
-8 457 468|==========================================================*
-7 345 295|====================================*=======
-6 235 170|=====================*========
-5 129 93|===========*=====
-4 68 49|======*==
-3 46 26|===*==
-2 35 13|=*===
-1 11 7|*=
0 7 3|*
1 6 1|*
2 1 1|*
3 1 0|=
4 1 0|=
5 0 0|
6 0 0|
7 1 0|=
8 0 0|
9 0 0|
> 10 22 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 273.5182
P(chi-square) = 0

Total sequences searched: 2757

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: