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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Ehrlichia canis str. Jake  

Data for CP000107  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000107.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000107_0213 CDS_322158-323570 89.6 1.1e-25 1
CP000107_0312 CDS_482228-479754 48.3 5.5e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000107_0213 1/1 234 303 .. 1 87 [] 89.6 1.1e-25
CP000107_0312 1/1 439 505 .. 1 87 [] 48.3 5.5e-14

Alignments of top-scoring domains:
CP000107_0213: domain 1 of 1, from 234 to 303: score 89.6, E = 1.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+flan+sHELRTPL++I+g++e+++ e+ ++ + +
CP000107_0 234 SKSQFLANVSHELRTPLNSIIGFSEMMKSESM------GAIDNVH-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey++ i++++ +ll+Lind+Ld+s+ ea+
CP000107_0 273 ---------YKEYINDIHNSGVHLLSLINDILDFSKVEAN 303

CP000107_0312: domain 1 of 1, from 439 to 505: score 48.3, E = 5.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI+g+++lLl +++++++
CP000107_0 439 AIGQLAGGIAHDFNNILTAIIGFCDLLLI--------RHTATDPS-- 475

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++ a+r +Li +lL +sr ++
CP000107_0 476 ----------FSDIMQIKQNANRATNLIKQLLAFSRKQTL 505


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 2 0|=
-13 20 0|=====
-12 56 21|=====*========
-11 118 109|===========================*==
-10 173 203|============================================ *
-9 182 210|============================================== *
-8 145 157|===================================== *
-7 94 99|========================*
-6 66 57|==============*==
-5 20 31|===== *
-4 19 16|===*=
-3 11 8|=*=
-2 9 4|*==
-1 1 2|*
0 3 1|*
1 2 0|=
> 2 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 73.9409
P(chi-square) = 2.557e-12

Total sequences searched: 925

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: