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Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Thiomicrospira crunogena XCL-2  

Data for CP000109  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000109.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000109_1921 CDS_2108677-2111382 101.9 8.3e-29 1
CP000109_2175 CDS_2400483-2404715 95.4 5.8e-27 1
CP000109_0066 CDS_80217-82382 94.3 1.2e-26 1
CP000109_1910 CDS_2097555-2094199 92.6 3.7e-26 1
CP000109_2065 CDS_2286227-2283381 92.4 4.2e-26 1
CP000109_0541 CDS_607277-608584 77.8 5.8e-22 1
CP000109_1444 CDS_1563617-1562445 62.7 1.1e-17 1
CP000109_0968 CDS_1046496-1047863 57.6 3e-16 1
CP000109_0906 CDS_982761-983843 56.9 4.8e-16 1
CP000109_1384 CDS_1498319-1496391 49.4 6.1e-14 1
CP000109_2184 CDS_2414700-2413216 47.3 2.5e-13 1
CP000109_1203 CDS_1316171-1314612 29.7 2.4e-08 1
CP000109_0225 CDS_268014-271070 28.9 4e-08 1
CP000109_0188 CDS_224381-222204 28.7 4.7e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000109_1921 1/1 514 579 .. 1 87 [] 101.9 8.3e-29
CP000109_2175 1/1 923 988 .. 1 87 [] 95.4 5.8e-27
CP000109_0066 1/1 216 281 .. 1 87 [] 94.3 1.2e-26
CP000109_1910 1/1 756 821 .. 1 87 [] 92.6 3.7e-26
CP000109_2065 1/1 577 643 .. 1 87 [] 92.4 4.2e-26
CP000109_0541 1/1 202 268 .. 1 87 [] 77.8 5.8e-22
CP000109_1444 1/1 171 237 .. 1 87 [] 62.7 1.1e-17
CP000109_0968 1/1 229 293 .. 1 87 [] 57.6 3e-16
CP000109_0906 1/1 130 188 .. 1 79 [. 56.9 4.8e-16
CP000109_1384 1/1 156 222 .. 1 87 [] 49.4 6.1e-14
CP000109_2184 1/1 266 334 .. 1 87 [] 47.3 2.5e-13
CP000109_1203 1/1 292 353 .. 1 87 [] 29.7 2.4e-08
CP000109_0225 1/1 622 692 .. 1 87 [] 28.9 4e-08
CP000109_0188 1/1 503 575 .. 1 87 [] 28.7 4.7e-08

Alignments of top-scoring domains:
CP000109_1921: domain 1 of 1, from 514 to 579: score 101.9, E = 8.3e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefl+++sHELRTPL++I+g+a+lL+ ++lse+q
CP000109_1 514 AKSEFLSSMSHELRTPLNSIIGFAQLLEL---------SDLSEKQ-- 549

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ i ++e+ll+LindlL+l++ie+g
CP000109_1 550 ----------KKQLKNISTSGEHLLHLINDLLELAKIESG 579

CP000109_2175: domain 1 of 1, from 923 to 988: score 95.4, E = 5.8e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHE+RTP++aI+g++elL e +e+ +
CP000109_2 923 TKSQFLANMSHEIRTPMNAIIGFTELLNE----------QVTEPRL- 958

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ti+ +++ ll Lind+Ldls+ieag
CP000109_2 959 ----------KRYIRTIQAAGKTLLTLINDILDLSKIEAG 988

CP000109_0066: domain 1 of 1, from 216 to 281: score 94.3, E = 1.2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTP+++I+g++ lLl+ t l eq
CP000109_0 216 LKSEFLANMSHEIRTPMNGIIGMTGLLLD---------TSLKKEQ-- 251

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++ t++++ae+ll++ind+Ld+s+ieag
CP000109_0 252 ----------RDLTLTVKESAESLLAIINDILDFSKIEAG 281

CP000109_1910: domain 1 of 1, from 756 to 821: score 92.6, E = 3.7e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefl+++sHELRTPL++I+g+++lL + ++l+e++
CP000109_1 756 AKSEFLSSMSHELRTPLNSIIGFSDLLSM---------ADLPEKE-- 791

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i +++++ll+Lin+lL+ls+ie+g
CP000109_1 792 ----------QHQVDHISESGHHLLALINQLLELSKIEQG 821

CP000109_2065: domain 1 of 1, from 577 to 643: score 92.4, E = 4.2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fl+++sHELRTPL+a++g+a+lL + d++l+++q
CP000109_2 577 AKSQFLSSMSHELRTPLNAVLGFAQLLDM--------DENLTADQ-- 613

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i +++++ll+Lind+Ldl++ie+g
CP000109_2 614 ----------KDNIYEIVKAGNHLLDLINDVLDLAKIESG 643

CP000109_0541: domain 1 of 1, from 202 to 268: score 77.8, E = 5.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPLt++ gy+e++ + + ++ +
CP000109_0 202 IRRDFVANASHELRTPLTVLNGYLEVMID---------SMEPDST-- 237

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ le +++++ r++++i+dlL+ls +e++
CP000109_0 238 ---------WQKPLEQMHQQSYRMQSIIDDLLTLSSMESE 268

CP000109_1444: domain 1 of 1, from 171 to 237: score 62.7, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++a+l+H++RTPL++ ++y++ + + l++++r
CP000109_1 171 SMGEMAASLAHQIRTPLASALLYVSQMSS---------GQLDSQKR- 207

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++ l+++++l++L+nd+L++++ +
CP000109_1 208 ----------EKFVHKSLNSLRHLESLVNDMLQYAKGGKA 237

CP000109_0968: domain 1 of 1, from 229 to 293: score 57.6, E = 3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a++sHELRTPLt ++g +e++++ + +++ +
CP000109_0 229 SRNQWIADISHELRTPLTILQGSLEAIKD---------GIRPASE-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ i++e+ l+rL++dl + + + g
CP000109_0 265 -----------ANLQQIHEEVLWLNRLVDDLYQVTLNDIG 293

CP000109_0906: domain 1 of 1, from 130 to 188: score 56.9, E = 4.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++++l+HE+++PL++I g ++lL++++ + +++
CP000109_0 130 AGNLLVRTLAHEIKNPLAGIYGSTQLLQKRF--------PDNDKA-- 166

peLRledpeyreyletilreaerllrLindlL<-*
++le+ilre++rl++L++++L
CP000109_0 167 ----------DQFLEVILREVKRLQNLVDRML 188

CP000109_1384: domain 1 of 1, from 156 to 222: score 49.4, E = 6.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fla+lsHELR PL ++ +++++++++ l e +
CP000109_1 156 EQTQFLAMLSHELRSPLMGMNSLISIIKDRY---------LKQESI- 192

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++++ +++l+ Lind+L++s+ e +
CP000109_1 193 ----------SDQLKVMRLTIDQLNFLINDILTYSQTEFN 222

CP000109_2184: domain 1 of 1, from 266 to 334: score 47.3, E = 2.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f++n+sHEL+TPL++++ ++lL eel ++l++eq
CP000109_2 266 EKQQFIRNISHELKTPLATLKEGTDLLSEELI------GTLNAEQ-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++e ++ + L+ +lL++ ++ +
CP000109_2 305 ----------KEIVELMQVGNFNIMGLVANLLEYQKAVST 334

CP000109_1203: domain 1 of 1, from 292 to 353: score 29.7, E = 2.4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ ++l+HE+ +PL+ +++ ++lL+++++
CP000109_1 292 YLKQLPRTLRHEIHNPLNRLSMSLSLLEKDVE--------------- 323

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ ++++e+l ++i l + s ie
CP000109_1 324 ----------HKQVRYSKHALEQLKQIIASLSEASSIEDS 353

CP000109_0225: domain 1 of 1, from 622 to 692: score 28.9, E = 4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ nl+H++++ Lt+I+g+++l + l++ ++ + ++
CP000109_0 622 ALGKLTGNLAHDFNNFLTTIIGNLDLSKL-----LLEQPDIDKLKL- 662

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ + +++e ++L ++lL++sr +
CP000109_0 663 ----------EEKLNAAVSASEKASKLTRRLLTFSRQQPV 692

CP000109_0188: domain 1 of 1, from 503 to 575: score 28.7, E = 4.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a s+ + l+HE+++PLt I++ ae L +l a s+ +l
CP000109_0 503 AWSDVAQRLAHEIKNPLTPIQLSAERLNYKL----ADKLISSDRRLL 545

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++eti++++ +++L++ + +++ +
CP000109_0 546 ----------NRMTETIIEQVAAMQNLVQAFTEYADTPEI 575


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 2 0|=
-13 21 1|*==
-12 85 50|======*====
-11 241 260|=============================== *
-10 388 482|================================================= *
-9 436 498|======================================================= *
-8 355 373|============================================= *
-7 246 235|=============================*=
-6 166 135|================*====
-5 100 74|=========*===
-4 51 39|====*==
-3 35 20|==*==
-2 20 11|=*=
-1 16 5|*=
0 6 3|*
1 3 1|*
2 5 0|=
3 2 0|=
4 2 0|=
5 0 0|
6 1 0|=
7 0 0|
> 8 15 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 107.3532
P(chi-square) = 6.18e-18

Total sequences searched: 2196

Whole sequence top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: