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Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Nitrobacter winogradskyi Nb-255  

Data for CP000115  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000115.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000115_0119 CDS_140139-142403 91.6 1e-25 1
CP000115_1194 CDS_1311704-1309365 87.0 2e-24 1
CP000115_2207 CDS_2416806-2414989 85.9 4.2e-24 1
CP000115_1206 CDS_1333228-1331618 81.2 9e-23 1
CP000115_1006 CDS_1110898-1107881 77.9 7.6e-22 1
CP000115_0504 CDS_562171-563424 73.4 1.4e-20 1
CP000115_0045 CDS_50291-52807 73.0 1.8e-20 1
CP000115_0346 CDS_389266-387431 69.8 1.5e-19 1
CP000115_1437 CDS_1572235-1573410 53.3 7e-15 1
CP000115_0114 CDS_135828-133009 48.4 1.7e-13 1
CP000115_2896 CDS_3151767-3153137 48.4 1.8e-13 1
CP000115_1439 CDS_1575035-1577335 45.7 1e-12 1
CP000115_1192 CDS_1304970-1306430 44.6 2e-12 1
CP000115_1023 CDS_1125869-1124334 44.5 2.2e-12 1
CP000115_3038 CDS_3324197-3322455 43.7 3.6e-12 1
CP000115_0746 CDS_835353-836609 43.3 4.8e-12 1
CP000115_2502 CDS_2738317-2736917 39.9 4.3e-11 1
CP000115_1132 CDS_1248011-1250677 36.2 5e-10 1
CP000115_0110 CDS_129419-130759 35.3 9.2e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000115_0119 1/1 234 299 .. 1 87 [] 91.6 1e-25
CP000115_1194 1/1 536 605 .. 1 87 [] 87.0 2e-24
CP000115_2207 1/1 345 414 .. 1 87 [] 85.9 4.2e-24
CP000115_1206 1/1 263 332 .. 1 87 [] 81.2 9e-23
CP000115_1006 1/1 773 842 .. 1 87 [] 77.9 7.6e-22
CP000115_0504 1/1 180 247 .. 1 87 [] 73.4 1.4e-20
CP000115_0045 1/1 606 674 .. 1 87 [] 73.0 1.8e-20
CP000115_0346 1/1 377 442 .. 1 87 [] 69.8 1.5e-19
CP000115_1437 1/1 139 203 .. 1 87 [] 53.3 7e-15
CP000115_0114 1/1 571 639 .. 1 87 [] 48.4 1.7e-13
CP000115_2896 1/1 244 302 .. 1 87 [] 48.4 1.8e-13
CP000115_1439 1/1 506 577 .. 1 87 [] 45.7 1e-12
CP000115_1192 1/1 237 303 .. 1 87 [] 44.6 2e-12
CP000115_1023 1/1 281 352 .. 1 87 [] 44.5 2.2e-12
CP000115_3038 1/1 353 422 .. 1 87 [] 43.7 3.6e-12
CP000115_0746 1/1 44 109 .. 1 87 [] 43.3 4.8e-12
CP000115_2502 1/1 263 321 .. 1 87 [] 39.9 4.3e-11
CP000115_1132 1/1 503 569 .. 1 87 [] 36.2 5e-10
CP000115_0110 1/1 209 280 .. 1 87 [] 35.3 9.2e-10

Alignments of top-scoring domains:
CP000115_0119: domain 1 of 1, from 234 to 299: score 91.6, E = 1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla+ sHE+RTPL++I+g++ lLle t l++eq
CP000115_0 234 AKSRFLAMTSHEFRTPLNGIIGMSGLLLE---------TLLTPEQ-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ ++ +++ ll+Li+dlLd+srieag
CP000115_0 270 ----------TTYVKAVKASGDALLSLIEDLLDYSRIEAG 299

CP000115_1194: domain 1 of 1, from 536 to 605: score 87.0, E = 2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHELRTPL+aI+g++e++ ++++ ++l++ +
CP000115_1 536 AKSKFLANMSHELRTPLNAIIGFSEIMSNGMF------GTLGSTK-- 574

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey + il ++++ll+ ind+Ld+s+ieag
CP000115_1 575 ---------YSEYCRDILTSGQYLLEVINDVLDMSKIEAG 605

CP000115_2207: domain 1 of 1, from 345 to 414: score 85.9, E = 4.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla++sHELRTPL+aI+g+++++ e+ +l++ r
CP000115_2 345 AKTRFLATMSHELRTPLNAIIGFSDMIVQEAT------LPLDATRR- 384

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey + i +++++ll+ +n +Ld+s++e+g
CP000115_2 385 ----------KEYAQLINDSGQHLLSVVNSILDMSKMESG 414

CP000115_1206: domain 1 of 1, from 263 to 332: score 81.2, E = 9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sHELRTPL+aI+g++e+++ + +e ++
CP000115_1 263 AKSRFLAQMSHELRTPLNAILGFSEVMKS---------EIFGEHAVA 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + y i++++ +ll+Lin++Ldlsrieag
CP000115_1 301 VY--------KTYSADIHNSGVHLLNLINEILDLSRIEAG 332

CP000115_1006: domain 1 of 1, from 773 to 842: score 77.9, E = 7.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak + la +sHE+RTPL++I+g+ae++ + + + l+ e
CP000115_1 773 AKADVLARISHEIRTPLNSIIGFAEVMID------EKFGSLGNER-- 811

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey + i+ ++er+ + i+dlLdlsrie+g
CP000115_1 812 ---------YVEYMKDIRASGERIISFIDDLLDLSRIETG 842

CP000115_0504: domain 1 of 1, from 180 to 247: score 73.4, E = 1.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPL+a++g++++L+ +++ + ++
CP000115_0 180 MRADFVANASHELRTPLAALSGFIDTLQG---------PAREDARAR 217

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +++ +a r+ rLi+dlL lsr e
CP000115_0 218 ----------ERFLGIMHAQAARMARLIDDLLSLSRVELS 247

CP000115_0045: domain 1 of 1, from 606 to 674: score 73.0, E = 1.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +f+ ++s ELR PLt+I+g+a+l+ + +g ++l+e+q
CP000115_0 606 MKVDFVHHVSYELRSPLTTIIGFAHLMND------PGTGPLTEKQ-- 644

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey++ i ++++ ll+L n++Ldl+ i+ag
CP000115_0 645 ----------AEYVNYITSSTDALLALTNNILDLATIDAG 674

CP000115_0346: domain 1 of 1, from 377 to 442: score 69.8, E = 1.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++sHEL++PLt++r ++e+L +++e r
CP000115_0 377 AIETFAADVSHELKNPLTSLRSAVETLPL----------AKTEASR- 412

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++le+i+++++rl+rLi+d+ d sr++a+
CP000115_0 413 ----------GRLLEVIDHDVRRLDRLISDISDASRLDAE 442

CP000115_1437: domain 1 of 1, from 139 to 203: score 53.3, E = 7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a+l+HE+++PL++Irg+a+lL+ +++++
CP000115_1 139 SVIALAAMLAHEIKNPLSGIRGAAQLLEQ----------GATPDD-- 173

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ i +ea+r+ L++++ + +
CP000115_1 174 ----------RMLTRLICDEADRIVTLVDRMEVFGDERPI 203

CP000115_0114: domain 1 of 1, from 571 to 639: score 48.4, E = 1.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I g ++lL++ ++ + +++
CP000115_0 571 AVGQLTGGIAHDFNNLLTGIVGSLDLLQT------HIKQGRTDRA-- 609

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+e + +a+r +L +lL ++r +
CP000115_0 610 ----------GRYIEAAMASANRAAALTHRLLAFARRQPL 639

CP000115_2896: domain 1 of 1, from 244 to 302: score 48.4, E = 1.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ef+a+++HELRTPL+ +r+ +e+L
CP000115_2 244 AQREFAADAAHELRTPLAILRTRIETLPL------------------ 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ + r++e ++r +++lLd + +e+
CP000115_2 273 ----------NDSIHDLARDVENMSRVVSQLLDATELETA 302

CP000115_1439: domain 1 of 1, from 506 to 577: score 45.7, E = 1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ ++ ++HE+++PLt I++ ae +++++ ++ +++ +
CP000115_1 506 AWGDVARRIAHEIKNPLTPIQLSAERIRRKF----GKVITQDKPI-- 546

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ti r++e ++r+++++ ++r+ +
CP000115_1 547 ---------FEQCTDTIVRQVEDIRRMVDEFSRFARMPKP 577

CP000115_1192: domain 1 of 1, from 237 to 303: score 44.6, E = 2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e n++H+L+TPLt +r ae +l+ +e +
CP000115_1 237 GLREVSDNIAHDLKTPLTRLRNRAEEALA---------RSGNESD-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr +le ++e++ l r n lL ++r+e+g
CP000115_1 273 ---------YRAALEQTIEESDGLIRTFNALLMIARAESG 303

CP000115_1023: domain 1 of 1, from 281 to 352: score 44.5, E = 2.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++++l+HEL++PLtaI+ y++ ++ +la +t+ + ++
CP000115_1 281 AMGEMASALAHELNQPLTAISNYIKGSRR----LLAASTDPDIAKI- 322

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+++ ++a r ++i++l+d+ ++
CP000115_1 323 ----------EMALDRAADQAIRAGQIIRRLRDFVSRRES 352

CP000115_3038: domain 1 of 1, from 353 to 422: score 43.7, E = 3.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e l +++H+L++PL +I+g ae+L e ++ + s +++
CP000115_3 353 FKNEILGTVAHDLKNPLGVILGRAEMLAE------LIGAGSSGDTV- 392

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i+++++rl ++++dl + ++a
CP000115_3 393 ----------TVQINHIRDATKRLIAMVDDLISDAMADAF 422

CP000115_0746: domain 1 of 1, from 44 to 109: score 43.3, E = 4.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ la+ +HE RTPLt+I++ ++lL + ++l+e +
CP000115_0 44 VVEDALAAFAHEVRTPLTGILAVSDLLAT---------SDLGERE-- 79

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +eti+ a++l +L + d +r +
CP000115_0 80 ----------RRWVETIKAGADHLASLATLFVDAARSRRS 109

CP000115_2502: domain 1 of 1, from 263 to 321: score 39.9, E = 4.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRT Lt ++ + l+ +
CP000115_2 263 QRTAMLAGVSHDLRTILTRFKLELALIGD------------------ 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++++++ + +++ L ++r ++g
CP000115_2 292 ----------SPDVDGMRKDVDEMHGMLEAYLAFARGDSG 321

CP000115_1132: domain 1 of 1, from 503 to 569: score 36.2, E = 5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H++++ L+aI+++ + Ll+ ++ +++
CP000115_1 503 SVGQLAGGIAHDFNNVLSAIMMANDFLLN--------AHKPTDPS-- 539

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++ a+r +L+++lL +sr ++
CP000115_1 540 ----------FQDIMQIKQNANRAAALVRQLLAFSRRQTL 569

CP000115_0110: domain 1 of 1, from 209 to 280: score 35.3, E = 9.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a+++HEL TPL++I + + L++ ++++ + e+qrl
CP000115_0 209 QIDGLAAAAAHELGTPLSTIFLISRELEK-----ALQENGAQEPQRL 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++++++a+r+++++ + +ls +a+
CP000115_0 251 ----------AGDLRIVREQAQRCRDILAKIAQLSSSGAP 280


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 5 0|=
-13 45 2|*====
-12 127 71|======*=====
-11 299 370|============================ *
-10 507 686|=============================================== *
-9 643 708|==========================================================*
-8 538 530|================================================*
-7 398 334|==============================*======
-6 249 192|=================*=====
-5 131 105|=========*==
-4 66 56|=====*
-3 37 29|==*=
-2 26 15|=*=
-1 16 8|*=
0 0 4|*
1 5 2|*
2 3 1|*
3 2 0|=
4 1 0|=
5 0 0|
6 0 0|
> 7 24 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 162.5235
P(chi-square) = 4.06e-29

Total sequences searched: 3122

Whole sequence top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: