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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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5 accessions found for Anabaena variabilis ATCC 29413  

Data for CP000119  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000119.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000119_0189 CDS_216410-214851 64.5 5.1e-19 1
CP000119_0206 CDS_232366-233505 45.4 1.4e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000119_0189 1/1 135 201 .. 1 87 [] 64.5 5.1e-19
CP000119_0206 1/1 145 213 .. 1 87 [] 45.4 1.4e-13

Alignments of top-scoring domains:
CP000119_0189: domain 1 of 1, from 135 to 201: score 64.5, E = 5.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efl +lsHELRTPL+aI+g a++Ll+ ++ ++ ++
CP000119_0 135 LKDEFLVTLSHELRTPLNAILGWAQILLK---------QTPNSSTT- 171

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++leti r a+ r+++d+Ld+s i +g
CP000119_0 172 ----------KRALETIVRNAKTQARIVEDILDISGIITG 201

CP000119_0206: domain 1 of 1, from 145 to 213: score 45.4, E = 1.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+++l H+L+TPL + + ++++ + e++ + s+ q
CP000119_0 145 LREDFASTLTHDLKTPLLGAIETIKAFQQEQF------GSVSPTQ-- 183

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+t+ r+ + l+L++ lLd r + +
CP000119_0 184 ----------QEVLDTMARSHKTSLQLVETLLDVYRNDIE 213


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-13 5 0|===
-12 19 7|===*======
-11 48 40|===================*====
-10 58 75|============================= *
-9 63 78|================================ *
-8 40 58|==================== *
-7 50 36|=================*=======
-6 27 21|==========*===
-5 18 11|=====*===
-4 5 6|==*
-3 4 3|=*
-2 3 1|*=
-1 1 0|=
0 0 0|
1 0 0|
> 2 3 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 39.9243
P(chi-square) = 3.309e-06

Total sequences searched: 344

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: