Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
39 projects found  

5 accessions found for Anabaena variabilis ATCC 29413  

Data for CP000121  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000121.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000121_0155 CDS_185754-187916 65.5 1.9e-19 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000121_0155 1/1 353 419 .. 1 87 [] 65.5 1.9e-19

Alignments of top-scoring domains:
CP000121_0155: domain 1 of 1, from 353 to 419: score 65.5, E = 1.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla lsHELR PL+ I+g ++lLl+ +lse ++
CP000121_0 353 VKDEFLAVLSHELRSPLNPILGWSSLLLK---------RKLSEAKI- 389

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l ti+r a+ ++Li+dlLd sri g
CP000121_0 390 ----------EEGLATIHRNAQLQSELIEDLLDVSRILRG 419


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 2 0|==
-13 9 0|=========
-12 9 5|====*====
-11 23 28|======================= *
-10 42 53|========================================== *
-9 46 55|============================================== *
-8 35 41|=================================== *
-7 24 26|======================== *
-6 19 14|=============*=====
-5 18 8|=======*==========
-4 5 4|===*=
-3 4 2|=*==
-2 1 1|*
-1 2 0|==
0 1 0|=
1 1 0|=
> 2 2 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 21.1176
P(chi-square) = 0.0036

Total sequences searched: 243

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: