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Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

7 accessions found for Rhizobium etli CFN 42  

Data for CP000133  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000133.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000133_1279 CDS_1349148-1346845 98.6 1.3e-27 1
CP000133_3106 CDS_3300312-3296911 96.1 7e-27 1
CP000133_2403 CDS_2551105-2552646 93.6 3.5e-26 1
CP000133_0382 CDS_408954-406672 87.5 1.9e-24 1
CP000133_1234 CDS_1304421-1305962 86.7 3.1e-24 1
CP000133_0497 CDS_525344-526453 83.2 3e-23 1
CP000133_0035 CDS_38820-36985 72.3 3.9e-20 2
CP000133_0030 CDS_33953-31371 71.7 5.6e-20 1
CP000133_0706 CDS_751841-748041 70.8 1e-19 1
CP000133_0612 CDS_647379-645763 54.8 3.4e-15 1
CP000133_2932 CDS_3111757-3113616 51.6 2.8e-14 1
CP000133_2630 CDS_2782639-2780897 49.4 1.2e-13 1
CP000133_1912 CDS_2028814-2029968 48.9 1.6e-13 1
CP000133_1024 CDS_1094905-1093508 48.1 2.7e-13 1
CP000133_1916 CDS_2034192-2036459 47.3 4.5e-13 1
CP000133_1690 CDS_1798515-1797775 47.3 4.5e-13 1
CP000133_0554 CDS_589730-586227 44.5 2.9e-12 1
CP000133_0610 CDS_645346-643751 44.4 3.1e-12 1
CP000133_0056 CDS_58527-57199 41.8 1.7e-11 1
CP000133_1277 CDS_1341989-1343401 41.7 1.8e-11 1
CP000133_3539 CDS_3784070-3785452 39.7 6.4e-11 1
CP000133_0616 CDS_650875-650153 37.8 2.3e-10 1
CP000133_3387 CDS_3617393-3615426 33.1 4.8e-09 1
CP000133_1517 CDS_1613764-1615410 33.0 5e-09 1
CP000133_2374 CDS_2524731-2523409 31.2 1.7e-08 1
CP000133_2969 CDS_3151675-3150299 31.0 1.9e-08 1
CP000133_2538 CDS_2688116-2686770 27.7 1.7e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000133_1279 1/1 541 610 .. 1 87 [] 98.6 1.3e-27
CP000133_3106 1/1 594 659 .. 1 87 [] 96.1 7e-27
CP000133_2403 1/1 263 332 .. 1 87 [] 93.6 3.5e-26
CP000133_0382 1/1 243 308 .. 1 87 [] 87.5 1.9e-24
CP000133_1234 1/1 241 310 .. 1 87 [] 86.7 3.1e-24
CP000133_0497 1/1 147 214 .. 1 87 [] 83.2 3e-23
CP000133_0030 1/1 628 696 .. 1 87 [] 71.7 5.6e-20
CP000133_0035 1/2 373 438 .. 1 87 [] 71.4 6.8e-20
CP000133_0706 1/1 1033 1102 .. 1 87 [] 70.8 1e-19
CP000133_0612 1/1 302 370 .. 1 87 [] 54.8 3.4e-15
CP000133_2932 1/1 402 470 .. 1 87 [] 51.6 2.8e-14
CP000133_2630 1/1 349 417 .. 1 87 [] 49.4 1.2e-13
CP000133_1912 1/1 141 205 .. 1 87 [] 48.9 1.6e-13
CP000133_1024 1/1 242 308 .. 1 87 [] 48.1 2.7e-13
CP000133_1916 1/1 506 578 .. 1 87 [] 47.3 4.5e-13
CP000133_1690 1/1 145 211 .. 1 87 [] 47.3 4.5e-13
CP000133_0554 1/1 801 866 .. 1 87 [] 44.5 2.9e-12
CP000133_0610 1/1 139 205 .. 1 87 [] 44.4 3.1e-12
CP000133_0056 1/1 218 284 .. 1 87 [] 41.8 1.7e-11
CP000133_1277 1/1 241 306 .. 1 87 [] 41.7 1.8e-11
CP000133_3539 1/1 238 303 .. 1 87 [] 39.7 6.4e-11
CP000133_0616 1/1 20 83 .. 1 82 [. 37.8 2.3e-10
CP000133_3387 1/1 428 496 .. 1 87 [] 33.1 4.8e-09
CP000133_1517 1/1 167 235 .. 1 87 [] 33.0 5e-09
CP000133_2374 1/1 235 293 .. 1 87 [] 31.2 1.7e-08
CP000133_2969 1/1 255 313 .. 1 87 [] 31.0 1.9e-08
CP000133_2538 1/1 243 301 .. 1 87 [] 27.7 1.7e-07

Alignments of top-scoring domains:
CP000133_1279: domain 1 of 1, from 541 to 610: score 98.6, E = 1.3e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g++e+L+++++ ++l++ +
CP000133_1 541 AKSEFLANMSHELRTPLNAILGFSEILQNQMF------GPLGSLK-- 579

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey + i++++++ll+ ind+Ld+s+ieag
CP000133_1 580 ---------YDEYARDIHDSGKHLLNVINDILDMSKIEAG 610

CP000133_3106: domain 1 of 1, from 594 to 659: score 96.1, E = 7e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP+++++g+aelL + t+l+ q
CP000133_3 594 AKSEFLANMSHEIRTPMNGVLGMAELLAK---------TNLDTRQ-- 629

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++i ++++ ll +ind+Ld+s+i+ag
CP000133_3 630 ----------KTFIDIIVKSGNALLTIINDILDFSKIDAG 659

CP000133_2403: domain 1 of 1, from 263 to 332: score 93.6, E = 3.5e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g++e++ +e+ ++l ++
CP000133_2 263 AKSRFLASMSHELRTPLNAILGFSEVMSAEVM------GPLANPT-- 301

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey i+r++++ll+Lin++Ldlsrieag
CP000133_2 302 ---------YKEYAGDIHRSGQHLLDLINEILDLSRIEAG 332

CP000133_0382: domain 1 of 1, from 243 to 308: score 87.5, E = 1.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks++la++sHE RTPL++I+g+++lL e t l+ eq
CP000133_0 243 AKSRLLATVSHEVRTPLSGILGMTHLLAE---------TRLTQEQ-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl i+++++ l +L++dlLd+s ie g
CP000133_0 279 ----------QNYLANIRQSGHALTQLVEDLLDFSTIEVG 308

CP000133_1234: domain 1 of 1, from 241 to 310: score 86.7, E = 3.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g++++L e++ ++ + +
CP000133_1 241 AKSRFLAAVSHELRTPLNAILGFSDILIGEYF------GKFENDRQ- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey++ +++++ +ll+ +n +Ld+s+ieag
CP000133_1 281 ----------REYVSLVRESGAHLLSVVNTMLDMSKIEAG 310

CP000133_0497: domain 1 of 1, from 147 to 214: score 83.2, E = 3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+an+sHELRTPL+++rg++e+++ +++++++++
CP000133_0 147 MRSDFVANASHELRTPLASLRGFIETIQG---------PAKNDQKAQ 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++l++a r++rL++dlL lsr+e
CP000133_0 185 ----------AQFLGIMLDQATRMSRLVDDLLSLSRLELK 214

CP000133_0030: domain 1 of 1, from 628 to 696: score 71.7, E = 5.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ ++s ELR PLt I+g+++lL++ +g ++l+e q
CP000133_0 628 LKNDFVQHVSYELRSPLTNIIGFTDLLRT------QGVGPLNERQ-- 666

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey++ i ++ ll L+nd+Ldl+ +ag
CP000133_0 667 ----------AEYIDHISTSSSVLLTLVNDILDLATVDAG 696

CP000133_0035: domain 1 of 2, from 373 to 438: score 71.4, E = 6.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++sHEL++PLt++r ++e+L ++se+ +
CP000133_0 373 AIESFAADVSHELKNPLTSLRSAVETLPL----------ARSEDSK- 408

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i+++++rl+rLi+d+ d sr++a+
CP000133_0 409 ----------KRLLDVIQHDVRRLDRLISDISDASRLDAE 438

CP000133_0706: domain 1 of 1, from 1033 to 1102: score 70.8, E = 1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla +sHE+RTPL+aI+g+++++ + ++ + +
CP000133_0 1033 HKTDFLARVSHEIRTPLNAIIGFSDMMAG------ERFGPIGHPR-- 1071

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey + i r++++ l+++ndlLd+s+ieag
CP000133_0 1072 ---------YIEYANDIGRSGRHVLDIVNDLLDISKIEAG 1102

CP000133_0612: domain 1 of 1, from 302 to 370: score 54.8, E = 3.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+ +sH+L+ PL ++ ++ Lle+++ ++l+++
CP000133_0 302 DLDEFAYIASHDLKEPLRGLHNHSRFLLEDYE------DKLDDDG-- 340

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+++ r ++r+++L+ndlL +sr++ +
CP000133_0 341 ----------VRRLNRLVRLSQRMEKLVNDLLYFSRLGRQ 370

CP000133_2932: domain 1 of 1, from 402 to 470: score 51.6, E = 2.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a+++HE+++P+++Ir+ya+ ++++ld ++++
CP000133_2 402 ILGQVAAGVAHEINQPVATIRAYADNARTFLD------RGQTAPA-- 440

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ i +er+ ++ ++l +++r + g
CP000133_2 441 ----------GENLQNIAALTERIGSITEELKTFARKGRG 470

CP000133_2630: domain 1 of 1, from 349 to 417: score 49.4, E = 1.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHE+RTPL+ I ++a+ L + + t+ s e +
CP000133_2 349 LQRRFVAMASHEFRTPLAIIDAAAQRLCR-------STTNVSGEYV- 387

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +i++++ r+ +L + +L r+e+g
CP000133_2 388 ----------HEKAGVIRSAVMRMVDLMESILASGRLETG 417

CP000133_1912: domain 1 of 1, from 141 to 205: score 48.9, E = 1.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++++l+HE+++PL++Irg+a+lL+ + +++
CP000133_1 141 SVTGLASMLAHEIKNPLSGIRGAAQLLEQ---------SVIDDDR-- 176

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i +e++r+ +L++++ +s +
CP000133_1 177 -----------ALTRLICDETDRIVSLVDRMEVFSDERPV 205

CP000133_1024: domain 1 of 1, from 242 to 308: score 48.1, E = 2.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ a+++H+L+TPL+ +r++++++ + ++ ++
CP000133_1 242 SMRQVSADIAHDLKTPLNRLRLTLDAAVA---------GNEQQADV- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ +++e++r+++ + lL +s+ieag
CP000133_1 279 ----------SALLDEARNESDRINATFEALLRISQIEAG 308

CP000133_1916: domain 1 of 1, from 506 to 578: score 47.3, E = 4.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ ++ ++HE+++PLt I++ ae +++++ ++ ++++ ++
CP000133_1 506 AWGDVARRIAHEIKNPLTPIQLSAERIQRRY----GKQINQDDRTV- 547

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ti+r++ + r+++++ ++r+ +
CP000133_1 548 ---------FDQCTDTIIRQVGDIGRMVDEFSAFARMPKP 578

CP000133_1690: domain 1 of 1, from 145 to 211: score 47.3, E = 4.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHE+RTPL+ I ++a+ Ll+++ ++ +e +
CP000133_1 145 LQRQFVAMASHEFRTPLAIIDAAAQRLLRKG-------GAVEPEFL- 183

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i+ ++ r+ +L + + l r a
CP000133_1 184 ----------NDKVRQIRASVSRIVDLMESI--LFRRTAR 211

CP000133_0554: domain 1 of 1, from 801 to 866: score 44.5, E = 2.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a++ H++ +PL+a r+y+++L e + ++
CP000133_0 801 GKTRFFAAAGHDILQPLNAARLYSSALVE---------RMAQSDN-- 836

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i++++e+ + ++ +Ld+sr+++g
CP000133_0 837 ----------SPIVRNIDSALESVETILGAVLDISRLDTG 866

CP000133_0610: domain 1 of 1, from 139 to 205: score 44.4, E = 3.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+++++H+L+ PL +I+ ++ +L ++ l++e+
CP000133_0 139 SLEIFTRAMAHDLKEPLRTIKSFSRILHG--------SAVLPAED-- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l+ +l++a+++++Li + ++++ea
CP000133_0 176 ----------RELLDYVLSAADHMEDLIVKVSNFTKLEAY 205

CP000133_0056: domain 1 of 1, from 218 to 284: score 41.8, E = 1.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HEL TPL++I+ a+ +++ el +++r
CP000133_0 218 QLDGLAAAAAHELGTPLATISVVAKEMER----------ELKDDDR- 253

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+re + +++++er+++++++l +ls ++
CP000133_0 254 ---------FREDVMLLRSQSERCRDILRRLTTLSSEGEA 284

CP000133_1277: domain 1 of 1, from 241 to 306: score 41.7, E = 1.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ n++H+L+TPLt +r a +l+ ++ ++r
CP000133_1 241 GLRQVSDNIAHDLKTPLTRLRNKAADALD----------MADGDTR- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +le i++e+++l r n lL +sr eag
CP000133_1 277 ----------RAALEGIISESDQLIRTFNALLMISRVEAG 306

CP000133_3539: domain 1 of 1, from 238 to 303: score 39.7, E = 6.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+ n+sH+LRTPL+ Ir+ + l + + + ++
CP000133_3 238 ALRHFTGNASHQLRTPLAIIRTQLALSAR----------AGTLGEA- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + ++++ + +r++ +lL +++i+a
CP000133_3 274 ----------QAAAMKGDQAVAHAERILAQLLLMAKIDAA 303

CP000133_0616: domain 1 of 1, from 20 to 83: score 37.8, E = 2.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +fla++sH+L PL I +yaelLl++l+ ++l++eq
CP000133_0 20 RIKRFLATASHDLQSPLRHIAMYAELLLDDLE------ETLDDEQ-- 58

peLRledpeyreyletilreaerllrLindlLdls<-*
+ l+ il+ a+ +rL l+ l+
CP000133_0 59 ----------LQSLKMILEKAQAAQRLTKALMSLA 83

CP000133_3387: domain 1 of 1, from 428 to 496: score 33.1, E = 4.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ a+lsHE+++PL+a ++y++ + ++d ++ee
CP000133_3 428 GLGQMSAALSHEFNQPLAAAKTYTDSAAV------LIDRGRTEEA-- 466

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +++i ++r+ ++ + l+ ++r ++
CP000133_3 467 ----------RDNIRRIGGLIDRMAAISRHLRNFARKPNE 496

CP000133_1517: domain 1 of 1, from 167 to 235: score 33.0, E = 5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++H++++ L+ I+g+++l+++++ t ++ +
CP000133_1 167 TIGQLTGGVAHDFNNMLAIIIGNLDLAQRRM-------TGHEDPRL- 205

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ +++ a+r L +lL +sr +
CP000133_1 206 ----------LNSLQNARDGAQRAAVLTARLLAFSRQQPL 235

CP000133_2374: domain 1 of 1, from 235 to 293: score 31.2, E = 1.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + la++sH+L TP+t +r+ a+++++ +++
CP000133_2 235 ERVQILAAISHDLQTPITRMRLRADMAED-------------SPE-- 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ ++rL++d ++r +g
CP000133_2 267 -------------RDKLVHDLAEIQRLVQDGIAYARSAHG 293

CP000133_2969: domain 1 of 1, from 255 to 313: score 31.0, E = 1.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l+++sH+LRT Lt ++ + l+ +
CP000133_2 255 QRTAMLSGVSHDLRTILTRFKLQLALAGD------------------ 283

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ + ++++ ++ +++ + ++r e +
CP000133_2 284 ----------NPDLHGLNDDVNDMQTMLEAYMAFARGEVE 313

CP000133_2538: domain 1 of 1, from 243 to 301: score 27.7, E = 1.7e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ fl +++HELRTP++ +++ ++ e
CP000133_2 243 KRQHFLIDAAHELRTPIAIMQTRIDGTAE------------------ 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++l+++ rl + ++lLd++r ++
CP000133_2 272 ----------GQERRRLLDDVARLAETAEQLLDFERNDQA 301


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-14 6 0|=
-13 38 3|*==
-12 159 92|======*=====
-11 386 478|============================ *
-10 704 887|=================================================== *
-9 783 916|======================================================== *
-8 711 686|================================================*==
-7 522 432|==============================*=======
-6 316 248|=================*=====
-5 172 136|=========*===
-4 106 73|=====*==
-3 41 38|==*
-2 27 20|=*
-1 14 10|*
0 9 5|*
1 5 2|*
2 2 1|*
> 3 34 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 190.8539
P(chi-square) = 2.505e-34

Total sequences searched: 4067

Whole sequence top hits:
tophits_s report:
Total hits: 27
Satisfying E cutoff: 27
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 27
Satisfying E cutoff: 27
Total memory: 31K


Acknowledgements:

This research is funded by:

Developed by: