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Classification of phyla is from NCBI page
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35 projects found  

1 accessions found for Pelobacter carbinolicus DSM 2380  

Data for CP000142  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000142.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000142_0728 CDS_789552-791327 96.0 5.9e-27 1
CP000142_1154 CDS_1242471-1239427 93.5 3.1e-26 1
CP000142_2090 CDS_2268130-2265629 91.6 1.1e-25 1
CP000142_2805 CDS_3083438-3081771 89.4 4.3e-25 1
CP000142_0055 CDS_66475-63872 86.2 3.5e-24 1
CP000142_2170 CDS_2357258-2355417 77.6 1e-21 1
CP000142_2520 CDS_2776861-2774378 69.1 2.6e-19 1
CP000142_3290 CDS_3594872-3596305 68.7 3.4e-19 1
CP000142_3124 CDS_3438590-3437361 68.7 3.4e-19 1
CP000142_0844 CDS_910329-909367 68.0 5.3e-19 1
CP000142_2138 CDS_2324453-2325553 67.7 6.4e-19 1
CP000142_2293 CDS_2499367-2497688 66.3 1.6e-18 1
CP000142_0280 CDS_322439-324109 65.1 3.4e-18 1
CP000142_2741 CDS_3016085-3014505 64.8 4.1e-18 1
CP000142_2308 CDS_2520380-2518935 63.7 8.8e-18 1
CP000142_2527 CDS_2786817-2783353 63.7 8.8e-18 1
CP000142_0547 CDS_604415-605860 63.6 9.1e-18 1
CP000142_0399 CDS_451123-449681 63.3 1.1e-17 1
CP000142_1853 CDS_2019767-2018505 59.0 1.8e-16 1
CP000142_2934 CDS_3219053-3216759 55.9 1.3e-15 1
CP000142_2160 CDS_2348258-2347083 55.2 2.2e-15 1
CP000142_2503 CDS_2741670-2743928 49.8 7.4e-14 1
CP000142_0194 CDS_227671-229920 43.9 3.5e-12 1
CP000142_1074 CDS_1152094-1150442 36.4 4.8e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000142_0728 1/1 366 433 .. 1 87 [] 96.0 5.9e-27
CP000142_1154 1/1 358 423 .. 1 87 [] 93.5 3.1e-26
CP000142_2090 1/1 299 364 .. 1 87 [] 91.6 1.1e-25
CP000142_2805 1/1 326 393 .. 1 87 [] 89.4 4.3e-25
CP000142_0055 1/1 635 701 .. 1 87 [] 86.2 3.5e-24
CP000142_2170 1/1 392 458 .. 1 87 [] 77.6 1e-21
CP000142_2520 1/1 600 670 .. 1 87 [] 69.1 2.6e-19
CP000142_3290 1/1 242 308 .. 1 87 [] 68.7 3.4e-19
CP000142_3124 1/1 31 96 .. 1 87 [] 68.7 3.4e-19
CP000142_0844 1/1 90 156 .. 1 87 [] 68.0 5.3e-19
CP000142_2138 1/1 139 205 .. 1 87 [] 67.7 6.4e-19
CP000142_2293 1/1 338 404 .. 1 87 [] 66.3 1.6e-18
CP000142_0280 1/1 325 391 .. 1 87 [] 65.1 3.4e-18
CP000142_2741 1/1 301 369 .. 1 87 [] 64.8 4.1e-18
CP000142_2308 1/1 262 327 .. 1 87 [] 63.7 8.8e-18
CP000142_2527 1/1 921 987 .. 1 87 [] 63.7 8.8e-18
CP000142_0547 1/1 252 320 .. 1 87 [] 63.6 9.1e-18
CP000142_0399 1/1 257 321 .. 1 87 [] 63.3 1.1e-17
CP000142_1853 1/1 208 274 .. 1 87 [] 59.0 1.8e-16
CP000142_2934 1/1 534 600 .. 1 87 [] 55.9 1.3e-15
CP000142_2160 1/1 174 240 .. 1 87 [] 55.2 2.2e-15
CP000142_2503 1/1 525 596 .. 1 87 [] 49.8 7.4e-14
CP000142_0194 1/1 382 445 .. 1 85 [. 43.9 3.5e-12
CP000142_1074 1/1 302 370 .. 1 87 [] 36.4 4.8e-10

Alignments of top-scoring domains:
CP000142_0728: domain 1 of 1, from 366 to 433: score 96.0, E = 5.9e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+t+I+g +e+Ll+++ e++e+
CP000142_0 366 IRRDFVANVSHELKTPITGIKGSVETLLDGA-------MERPEDA-- 403

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++i ++aerl+++i+dlLdlsrie+g
CP000142_0 404 ----------VRFLRIIAKQAERLNAIIDDLLDLSRIEQG 433

CP000142_1154: domain 1 of 1, from 358 to 423: score 93.5, E = 3.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fl n+sHE+RTP+++++g++elLl+ ++l eeq
CP000142_1 358 AKSQFLVNMSHEIRTPMNGVIGMTELLLD---------SPLAEEQ-- 393

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ +t+ ++++ ll++ind+Ld+s++eag
CP000142_1 394 ----------RQIADTVAESGRALLQIINDILDFSKLEAG 423

CP000142_2090: domain 1 of 1, from 299 to 364: score 91.6, E = 1.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP+ +++g aelL t+ls+ q
CP000142_2 299 AKSRFLANMSHEIRTPMIGVIGVAELLSG---------TPLSDHQ-- 334

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ + i++++e+ll+ +nd+Ld+s+ieag
CP000142_2 335 ----------RELAHMIHSSGESLLKVLNDILDFSKIEAG 364

CP000142_2805: domain 1 of 1, from 326 to 393: score 89.4, E = 4.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f++n+sHEL+TPLt+Ir+yaelL e+ + e +r
CP000142_2 326 RKTSFVSNVSHELKTPLTTIRMYAELLGEG--------RIREEGKR- 363

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl++i +e++rl rL+n++Ld+sr+e+
CP000142_2 364 ----------QRYLQVIVSESQRLTRLVNNVLDFSRLEQK 393

CP000142_0055: domain 1 of 1, from 635 to 701: score 86.2, E = 3.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ef+++++HELRTPLt+++g++e++l + l+e+q
CP000142_0 635 MKTEFISTAAHELRTPLTSVIGFSEVMLQ--------QGGLTEQQ-- 671

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l++i++ ae l ++++dlLdl+r ++g
CP000142_0 672 ----------TEFLSIIHKKAEVLGKIVEDLLDLARVDTG 701

CP000142_2170: domain 1 of 1, from 392 to 458: score 77.6, E = 1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+++l+++sHE+RTPLtaI+g+++ Ll+ + +++e q
CP000142_2 392 LKDDMLSSVSHEMRTPLTAIMGFTDYLLK--------SNDRPERQ-- 428

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl++i++++erl +L+++ L l r++ag
CP000142_2 429 ----------KDYLSIIQQQSERLKELVENHLNLQRLRAG 458

CP000142_2520: domain 1 of 1, from 600 to 670: score 69.1, E = 2.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef+++++HELRTPLt+I+gy+e + + + s+ q+
CP000142_2 600 VKTEFISTAAHELRTPLTSIMGYLEFCMH-----PEEFGGFSDAQL- 640

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ i++ ae l+r+++dlLd+sr+eag
CP000142_2 641 ----------KEFMTEIYDKAEVLERIVSDLLDISRMEAG 670

CP000142_3290: domain 1 of 1, from 242 to 308: score 68.7, E = 3.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+f ++sHELRTPLt ++g +e++l+ ++++e+
CP000142_3 242 KIKQFSGDASHELRTPLTILKGETEVALR---------WAKTPEE-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r++l + +e++r++r+i+dlL l++ e g
CP000142_3 278 ---------FRKMLISGMEEIDRMSRIIDDLLLLAKSEGG 308

CP000142_3124: domain 1 of 1, from 31 to 96: score 68.7, E = 3.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+l+ l HELRTPL++ +g++el l+ ++l ++q
CP000142_3 31 AMNELLSLLGHELRTPLAGTMGMLELVLA---------GDLAADQ-- 66

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +le + +a+++lrLi+dl dl+r+eag
CP000142_3 67 ----------RSALELANASARSMLRLIEDLHDLARMEAG 96

CP000142_0844: domain 1 of 1, from 90 to 156: score 68.0, E = 5.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +f++ +sHELR PL+++++++e++++ + ++ q+
CP000142_0 90 AQKQFISQVSHELRSPLASLQLHLETIRM---------RKPDPAQM- 126

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t+l+++ rl++++++lL+ r+e+
CP000142_0 127 ----------QDFLDTMLDDTVRLNNMVDNLLTANRLEQR 156

CP000142_2138: domain 1 of 1, from 139 to 205: score 67.7, E = 6.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+l+HE+++PL +I+g+a+lL el+++ l
CP000142_2 139 MLGTLAAGLAHEIKNPLGGIKGAAQLLNL----------ELPPDNPL 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey++++ re++r ++Li++lLdl+r +
CP000142_2 176 ----------REYTRVMTREVNRVNDLIEELLDLTRPRPT 205

CP000142_2293: domain 1 of 1, from 338 to 404: score 66.3, E = 1.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+l+HE+R+PL++I+g ++lL+e+ +l+ee+
CP000142_2 338 AVGQLAAGLAHEIRNPLASISGSVQLLKEN--------IALGEED-- 374

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + +++ +ea+rl+ L++++L ++r +
CP000142_2 375 ----------RSLMNIVVKEADRLNGLLREFLLFARPSPP 404

CP000142_0280: domain 1 of 1, from 325 to 391: score 65.1, E = 3.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++a+++HEL+ P+t+I+g+a+l+ +e+ e+ +e
CP000142_0 325 AIGEMAAGVAHELNSPMTVIIGTAQLIHREF--------EAQPEV-- 361

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re le i +++ r+ r+i++lL++sr ++
CP000142_0 362 ----------REPLEDIVNCGLRCKRIIQNLLTFSRQDHL 391

CP000142_2741: domain 1 of 1, from 301 to 369: score 64.8, E = 4.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL +I g++++Ll+++ + l+ +
CP000142_2 301 ELEAFSYSVSHDLRAPLRSIDGFSKALLDDYG------SRLDGDG-- 339

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++++r+++r+++Li+dlL lsri g
CP000142_2 340 ----------LQFLHRVRRASQRMSQLIDDLLNLSRITRG 369

CP000142_2308: domain 1 of 1, from 262 to 327: score 63.7, E = 8.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a+l+HE+ +PLtaI+gy++lL++ + +s +q
CP000142_2 262 TVGHLAAGLAHEIGNPLTAIIGYLSLLKA---------ELRSGPQ-- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++e++ ea+r++rL++dlLd++ +
CP000142_2 298 ----------TGLVERASGEANRIDRLVRDLLDFASPAST 327

CP000142_2527: domain 1 of 1, from 921 to 987: score 63.7, E = 8.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++a+++HE+++P+++I+ ya+lL + + + ++
CP000142_2 921 SLGELAAGVAHEINNPINGIINYAQLLAD--------SLDIEKDD-- 957

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ i++e+er +++++lL ++r++ +
CP000142_2 958 ----------LDILRGIIEEGERVANIVRNLLAFARARKE 987

CP000142_0547: domain 1 of 1, from 252 to 320: score 63.6, E = 9.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+f++++sHEL+TPL++Ir +elL e + ++l+++q
CP000142_0 252 DKSKFISHVSHELKTPLASIREGTELLVE------EEVGPLNDQQ-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ ++++ + +l +Li++lL +sr++a
CP000142_0 291 ----------REIAWILRKNGVHLHKLIDNLLGFSRMQAK 320

CP000142_0399: domain 1 of 1, from 257 to 321: score 63.3, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a++sHELRTPL+++rg +e+ ++++ l++++
CP000142_0 257 MRRRWVADISHELRTPLAVLRGEVEAVQDGV-------RLLTPQT-- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+t+++e+ rl+rL++dl +ls + g
CP000142_0 295 -------------LDTLHSEVLRLERLVSDLYELSLSDIG 321

CP000142_1853: domain 1 of 1, from 208 to 274: score 59.0, E = 1.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f++++sHELRTPL +I+ ++e+L + +l++ +
CP000142_1 208 REVLFTSDVSHELRTPLMVIQSACEILVA--------KRDLDDYT-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +e+i+r++ +++L++ +L l+r e
CP000142_1 245 ----------RQRIESIRRAVMKMESLVEAFLALARGEDT 274

CP000142_2934: domain 1 of 1, from 534 to 600: score 55.9, E = 1.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e +a++ HELR+PL +I g+a L + l+e +r
CP000142_2 534 ALGETAASVTHELRNPLVSIGGFARRLAR----------SLPEGTRE 570

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey +i re++r+++++ ++L +s+ +
CP000142_2 571 ----------QEYSGIIVREVRRMEEMLTNILGFSKKQML 600

CP000142_2160: domain 1 of 1, from 174 to 240: score 55.2, E = 2.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ a+++HE+R+PL+aI ++a++L+ + ++e+
CP000142_2 174 ALGHVSAGMAHEIRNPLNAIGLFAQILKP--------VLAHDAEK-- 210

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y++++l+e++r++ +++ lLd s+ +
CP000142_2 211 ----------AGYIDKLLHEVDRIDGILSKLLDASKGPQV 240

CP000142_2503: domain 1 of 1, from 525 to 596: score 49.8, E = 7.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ ++HE+++PLt Ir+ a+ L++++ + +e++r
CP000142_2 525 AWREVARRIAHEIKNPLTPIRLSAQRLRRRY------LDRFPEDDRV 565

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ i+++++ l L++++ ++++ +
CP000142_2 566 ---------FDDCTDMIIKQVDELKILVDEFSNFAKMPSA 596

CP000142_0194: domain 1 of 1, from 382 to 445: score 43.9, E = 3.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ Lt+I+gy++ Ll + s+e +
CP000142_0 382 AMGRLAGGVAHDFNNLLTVISGYSQYLLQ----------KYSDEAL- 417

peLRledpeyreyletilreaerllrLindlLdlsrie<-*
+ le i +++e+ +L ++lL +sr +
CP000142_0 418 ----------QGCLEQIVKAGEQAASLTSQLLAFSRRQ 445

CP000142_1074: domain 1 of 1, from 302 to 370: score 36.4, E = 4.8e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+++ +l H++ +P+ aI+ +++l l+ ++ ++l+ eq
CP000142_1 302 MKSDLFGMLTHDMINPILAIKSALSLVLD------GQVGPLNQEQ-- 340

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ + + + l +++d+Ld r g
CP000142_1 341 ----------QDILKMAADTNHDLMGMVSDFLDVFRDNYG 370


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 16 0|==
-13 72 2|*=======
-12 178 76|=======*==========
-11 373 397|====================================== *
-10 522 737|===================================================== *
-9 548 761|======================================================= *
-8 542 570|======================================================= *
-7 427 359|===================================*=======
-6 277 206|====================*=======
-5 156 113|===========*====
-4 103 60|=====*=====
-3 55 32|===*==
-2 21 16|=*=
-1 22 8|*==
0 7 4|*
1 3 2|*
2 3 1|*
3 0 0|
> 4 28 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 379.0278
P(chi-square) = 0

Total sequences searched: 3353

Whole sequence top hits:
tophits_s report:
Total hits: 24
Satisfying E cutoff: 24
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 24
Satisfying E cutoff: 24
Total memory: 30K


Acknowledgements:

This research is funded by:

Developed by: