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Classification of phyla is from NCBI page
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132 projects found  

7 accessions found for Rhodobacter sphaeroides 2.4.1  

Data for CP000143  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000143.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000143_2969 CDS_3133645-3136194 86.6 2.5e-24 1
CP000143_1507 CDS_1594265-1593225 85.3 5.8e-24 1
CP000143_1774 CDS_1887157-1884473 79.6 2.5e-22 1
CP000143_0141 CDS_160243-157676 77.8 8e-22 1
CP000143_2879 CDS_3035465-3038128 73.3 1.5e-20 1
CP000143_0262 CDS_273238-274956 65.8 2e-18 1
CP000143_1692 CDS_1797099-1794433 64.8 3.8e-18 1
CP000143_1000 CDS_1037728-1035995 64.1 5.8e-18 1
CP000143_2094 CDS_2225114-2226445 61.6 3.1e-17 1
CP000143_1473 CDS_1552408-1550207 57.4 4.7e-16 1
CP000143_1405 CDS_1474602-1473496 56.0 1.2e-15 1
CP000143_1806 CDS_1919653-1918334 49.1 1.1e-13 1
CP000143_2058 CDS_2188623-2186323 48.0 2.2e-13 1
CP000143_1182 CDS_1235327-1236760 46.4 6e-13 1
CP000143_1403 CDS_1472077-1469768 45.2 1.4e-12 1
CP000143_0095 CDS_105908-107296 44.2 2.6e-12 1
CP000143_0715 CDS_728856-730619 43.1 5.4e-12 1
CP000143_2523 CDS_2659550-2657565 41.9 1.2e-11 1
CP000143_2672 CDS_2815512-2814112 37.6 1.9e-10 1
CP000143_2116 CDS_2246349-2249186 34.0 2.1e-09 1
CP000143_2920 CDS_3082313-3079464 28.5 7.3e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000143_2969 1/1 338 403 .. 1 87 [] 86.6 2.5e-24
CP000143_1507 1/1 115 182 .. 1 87 [] 85.3 5.8e-24
CP000143_1774 1/1 668 734 .. 1 87 [] 79.6 2.5e-22
CP000143_0141 1/1 366 431 .. 1 87 [] 77.8 8e-22
CP000143_2879 1/1 663 730 .. 1 87 [] 73.3 1.5e-20
CP000143_0262 1/1 343 408 .. 1 87 [] 65.8 2e-18
CP000143_1692 1/1 386 452 .. 1 87 [] 64.8 3.8e-18
CP000143_1000 1/1 208 273 .. 1 87 [] 64.1 5.8e-18
CP000143_2094 1/1 196 291 .. 1 87 [] 61.6 3.1e-17
CP000143_1473 1/1 374 439 .. 1 87 [] 57.4 4.7e-16
CP000143_1405 1/1 133 197 .. 1 87 [] 56.0 1.2e-15
CP000143_1806 1/1 233 291 .. 1 87 [] 49.1 1.1e-13
CP000143_2058 1/1 395 461 .. 1 87 [] 48.0 2.2e-13
CP000143_1182 1/1 84 149 .. 1 87 [] 46.4 6e-13
CP000143_1403 1/1 521 592 .. 1 87 [] 45.2 1.4e-12
CP000143_0095 1/1 211 277 .. 1 87 [] 44.2 2.6e-12
CP000143_0715 1/1 363 431 .. 1 87 [] 43.1 5.4e-12
CP000143_2523 1/1 434 504 .. 1 87 [] 41.9 1.2e-11
CP000143_2672 1/1 244 308 .. 1 87 [] 37.6 1.9e-10
CP000143_2116 1/1 537 601 .. 1 87 [] 34.0 2.1e-09
CP000143_2920 1/1 444 510 .. 1 87 [] 28.5 7.3e-08

Alignments of top-scoring domains:
CP000143_2969: domain 1 of 1, from 338 to 403: score 86.6, E = 2.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP+++I g+a+lL e t l+e+q
CP000143_2 338 AKSAFLANMSHEIRTPMNGIVGMADLLCE---------TVLTEDQ-- 373

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + eti++++e ll +ind+Ld+s+iea+
CP000143_2 374 ----------RLFSETIRSSGEALLVIINDILDYSKIEAN 403

CP000143_1507: domain 1 of 1, from 115 to 182: score 85.3, E = 5.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPLta++g++e+L+ ++++++ ++
CP000143_1 115 IRRDFVANVSHELRTPLTALLGFIETLQG---------AARDDPAAR 152

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l ++ rea r++rL++dlL lsr e++
CP000143_1 153 ----------SRFLGIMAREAGRMNRLVQDLLSLSRVESE 182

CP000143_1774: domain 1 of 1, from 668 to 734: score 79.6, E = 2.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ fl+ +sHELRTP+t+Ir+++e+L + ++l++e +
CP000143_1 668 QKDAFLSQISHELRTPMTSIRAFSEILMD---------GDLPPEMA- 704

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i++ea rl rL++dlLdls +e+g
CP000143_1 705 ----------ARHARIIHDEAIRLTRLLDDLLDLSVLENG 734

CP000143_0141: domain 1 of 1, from 366 to 431: score 77.8, E = 8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k +fla +sHE+RTPL+++ g +elL t+l++ q
CP000143_0 366 TKADFLAVMSHEMRTPLNGLAGSLELLAQ---------TPLDPRQ-- 401

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++++++ +ae ll+ +n +Ld++r ea
CP000143_0 402 ----------RELVSVLRASAEILLDHVNSVLDIARSEAR 431

CP000143_2879: domain 1 of 1, from 663 to 730: score 73.3, E = 1.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LRTPL +I+g+a L e ++l++e +
CP000143_2 663 LRTALLSSVSHDLRTPLVTIIGAAGSLAE--------PGALPPEAQ- 700

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + eti++e+erl+r +++lLd++r+++g
CP000143_2 701 ----------QALAETIREEGERLDRYVQNLLDMTRLGHG 730

CP000143_0262: domain 1 of 1, from 343 to 408: score 65.8, E = 2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a+++HE+++PL+++r ++ +++ + + ++
CP000143_0 343 ANEQFAADVAHEIKNPLASLRSAVGTMRL---------ARREDQR-- 378

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i+++++rl+rL++d+ sr++++
CP000143_0 379 ----------EQLLDVIEHDVRRLDRLVSDISNASRLDSE 408

CP000143_1692: domain 1 of 1, from 386 to 452: score 64.8, E = 3.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sHE+RTPL++++++++lL++ +t+l++ q
CP000143_1 386 AKSRFLAVMSHEMRTPLNGLMAASDLLQT--------STDLTDRQ-- 422

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++++++ ++ l+++n++L+l+r+
CP000143_1 423 ----------RWLTDIVIGCGSAALDQVNNVLELTRLSDK 452

CP000143_1000: domain 1 of 1, from 208 to 273: score 64.1, E = 5.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla +sHELRTPL+aI+g ++ l+ ++ ++
CP000143_1 208 TKDRFLAQMSHELRTPLNAILGIGHAELR---------GASDPVS-- 243

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l +++r+ae l+ +++d+Ld+s ++g
CP000143_1 244 ----------RDRLGVLIRSAEGLSTMLDDILDMSAVQQG 273

CP000143_2094: domain 1 of 1, from 196 to 291: score 61.6, E = 3.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldk..v.lagdtelsee
+++++la+++HEL++P++ + ++a++L +++ k ++ + + ++ +
CP000143_2 196 SLGRLLAGVAHELNNPISFVYANAHALGRYATKfeQyFEQVQAGAPR 242

qrlpeLR.l.....edpeyreyletilreaerllrLindlLdlsrieag<
++l +LR++ + ++e+++ r++++ +++ aer +++++dl+ ls ++g
CP000143_2 243 EALIRLReElkldrEVRNLRDAVQGARDGAERVRDIVEDLRRLSSEGSG 291

-*

CP000143_2 - -

CP000143_1473: domain 1 of 1, from 374 to 439: score 57.4, E = 4.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+a++sH+L +PL+a ++++ ++ + ++ +e
CP000143_1 374 SRSRFVAAASHDLLQPLSAAKLFIATIGD---------EAVAPES-- 409

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l ++++++++ + ++ lLd+s++e+g
CP000143_1 410 ----------REALTKAQKALDSVEGILGALLDISKLESG 439

CP000143_1405: domain 1 of 1, from 133 to 197: score 56.0, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +l+HE+++PL++I+g+a+l+ + +ls+e+
CP000143_1 133 SAIGMAEMLAHEIKNPLAGISGAAQLIAM----------NLSAED-- 167

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ + i +e++r+ +L++++ ++ ++ +
CP000143_1 168 ----------RELADLIVEETRRIVKLLEQVEQFGNLRPP 197

CP000143_1806: domain 1 of 1, from 233 to 291: score 49.1, E = 1.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l+++sH+LRTPLt +r+ +++L + +e+
CP000143_1 233 QRTLMLSGVSHDLRTPLTRLRLGLSMLSD-------------PEE-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l ++ ++rL++++L + r +a
CP000143_1 265 -------------GQELLGDVADMERLVDEFLSFVRGDAL 291

CP000143_2058: domain 1 of 1, from 395 to 461: score 48.0, E = 2.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI+g+++lLl ++++ +++
CP000143_2 395 AIGQLAGGIAHDFNNLLTAISGHCDLLLL--------RHDREDPE-- 431

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l i++ a+r +L+ +lL +sr ++
CP000143_2 432 ----------FADLVQIHQNANRAASLVGQLLAFSRKQTL 461

CP000143_1182: domain 1 of 1, from 84 to 149: score 46.4, E = 6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fl+++sH+L +PL+a +++++ L e t + q
CP000143_1 84 SKSRFLRAASHDLLQPLSAAKLFLSHLSE---------TVNEPLQ-- 119

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i + ++ ++Li+ lL++sr+++
CP000143_1 120 ----------ADLVSRIGTAFDSTEELIRALLEISRLDSV 149

CP000143_1403: domain 1 of 1, from 521 to 592: score 45.2, E = 1.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ ++ ++HE+++PLt I++ ae +++++ +l eq+
CP000143_1 521 AWGDVARRIAHEIKNPLTPIQLSAERIKRKF-------RPLVGEQAG 560

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +y ++i+r+++ l+r+++++ ++r+ ++
CP000143_1 561 DL--------DQYSDVIIRQTNDLRRIVDEFSKFARMPEP 592

CP000143_0095: domain 1 of 1, from 211 to 277: score 44.2, E = 2.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +a+++HEL TPL++I++ ++ L e else+ +l
CP000143_0 211 DLGGVVAAAAHELGTPLATIKLVSSELAE----------ELSEQPAL 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ e i+++a+r++++++ + + + +
CP000143_0 248 ----------RDDAELIREQADRCRDILRSMGRAGKDDLQ 277

CP000143_0715: domain 1 of 1, from 363 to 431: score 43.1, E = 5.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+ a++sHEL++PL+a+++y+ ++ l ++ee
CP000143_0 363 ALGEMSAAVSHELNQPLAAMKTYLAGAKLLLQ------RRRTEEA-- 401

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++i++ +er+ ++ ++l ++r + +
CP000143_0 402 ----------LASFQRIDDLIERMGAITRQLKSYARKGGE 431

CP000143_2523: domain 1 of 1, from 434 to 504: score 41.9, E = 1.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PL+aI ya + + l++ + +++ +
CP000143_2 434 TLGEMASTLAHELNQPLAAIASYAAGAAN-----LLRQERADPALL- 474

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l ++ ++a+r ++i+++ dl r +++
CP000143_2 475 ----------SSALAKLSHQADRAGQIIRRIQDLVRKREP 504

CP000143_2672: domain 1 of 1, from 244 to 308: score 37.6, E = 1.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a +sH+LR+ Lt+ +++a+ L + ++
CP000143_2 244 QLGGAVAKISHDLRNILTTAQLFADRLSA----------SDDPAV-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ +++r +L + L++ r+e++
CP000143_2 279 ----------ARAAPKLVGSIRRAVSLCESTLTFGRAEEP 308

CP000143_2116: domain 1 of 1, from 537 to 601: score 34.0, E = 2.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++l+H+L++ L+aI g a l++e +s
CP000143_2 537 VIGQLASGLAHDLNNLLAAIGGSALLIQE----------MQSGAA-- 571

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++il ++e+ +L++++L+l + +++
CP000143_2 572 ----------EVHAQRILAATEQAGALVRRFLTLGKRQSN 601

CP000143_2920: domain 1 of 1, from 444 to 510: score 28.5, E = 7.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++H++++ L +I g ++l l+ +l+e++++
CP000143_2 444 AIGNLAGGIAHDFNNLLQTITGSIQLSLR----------ALDEDHAA 480

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ +lr++er L ++lL + r +
CP000143_2 481 ----------RPRLDQALRAVERGATLASQLLAFGRRQPL 510


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 4 0|=
-13 26 2|*==
-12 95 69|======*==
-11 253 358|======================= *
-10 444 664|========================================= *
-9 632 686|==========================================================*
-8 548 513|==============================================*===
-7 411 323|=============================*========
-6 248 186|================*======
-5 154 102|=========*====
-4 80 54|====*===
-3 44 28|==*=
-2 18 15|=*
-1 17 7|*=
0 13 4|*=
1 5 2|*
2 3 1|*
> 3 27 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 220.9828
P(chi-square) = 6.1e-311

Total sequences searched: 3022

Whole sequence top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: