Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

7 accessions found for Rhodobacter sphaeroides 2.4.1  

Data for CP000145  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000145.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000145_0065 CDS_77510-78826 41.4 5.3e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000145_0065 1/1 224 289 .. 1 87 [] 41.4 5.3e-13

Alignments of top-scoring domains:
CP000145_0065: domain 1 of 1, from 224 to 289: score 41.4, E = 5.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a+++HELRTP+++ + a+ ++ ++ +++
CP000145_0 224 AERSFAAHAAHELRTPVAGATAQAQRIRI---------ETTDPKA-- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i+ ++rl+rL + l++l+r+e g
CP000145_0 260 ----------AMRAGEIEATLKRLSRLADKLMQLARAEGG 289


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-12 3 2|=*=
-11 7 11|======= *
-10 15 21|=============== *
-9 19 22|=================== *
-8 17 17|================*
-7 11 10|=========*=
-6 11 6|=====*=====
-5 9 3|==*======
-4 3 1|*==
-3 2 0|==
> -2 3 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 8.6122
P(chi-square) = 0.1256

Total sequences searched: 100

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: